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AT1G19790.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : SHI-related sequence 7
Curator
Summary (TAIR10)
A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis.
Computational
Description (TAIR10)
SHI-related sequence 7 (SRS7); CONTAINS InterPro DOMAIN/s: Lateral Root Primordium type 1, C-terminal (InterPro:IPR006511), Zinc finger, Lateral Root Primordium type 1 (InterPro:IPR006510), Protein of unknown function DUF702 (InterPro:IPR007818); BEST Arabidopsis thaliana protein match is: SHI-related sequence 5 (TAIR:AT1G75520.1); Has 184 Blast hits to 184 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 8; Plants - 174; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JSE9eggNOG:ENOG41108W1EMBL:AC007797EMBL:AY800588
EMBL:AY800589EMBL:AY924676EMBL:CP002684EnsemblPlants:AT1G19790
EnsemblPlants:AT1G19790.1EnsemblPlants:AT1G19790.2entrez:838567GeneID:838567
GO:GO:0003677GO:GO:0005634GO:GO:0007275GO:GO:0009299
GO:GO:0009734GO:GO:0009851GO:GO:0046872hmmpanther:PTHR31604
hmmpanther:PTHR31604:SF3HOGENOM:HOG000242956InParanoid:Q9FXH7InterPro:IPR006510
InterPro:IPR006511InterPro:IPR007818KEGG:ath:AT1G19790OMA:PAVFRCM
PaxDb:Q9FXH7Pfam:PF05142Pfam:Q9FXH7PhylomeDB:Q9FXH7
PIR:A86331PRIDE:Q9FXH7PRO:PR:Q9FXH7Proteomes:UP000006548
RefSeq:NP_001031069.1RefSeq:NP_173409.1TAIR:AT1G19790tair10-symbols:SRS7
TIGRfam:TIGR01623TIGRfam:TIGR01624TIGRFAMs:TIGR01623TIGRFAMs:TIGR01624
UniGene:At.51177UniGene:At.68779UniProt:Q9FXH7
Coordinates (TAIR10) chr1:-:6838400..6839831
Molecular Weight (calculated) 37930.30 Da
IEP (calculated) 6.66
GRAVY (calculated) -0.81
Length 345 amino acids
Sequence (TAIR10)
(BLAST)
001: MAGLFYLGGR DHNKQDHHQE KDHNEDKSNN YLYLYKDEIY NNNKGFEIFP PQYFQQQQQQ NHAAAPTNLY SFGMVPSGGN INNNRSTNRS LYFNVVSDHE
101: PVRSSTGGFT VTRQGNMNCQ DCGNQAKKDC PHMRCRTCCK SRGFDCQTHV KSTWVSAAKR RERQAQLAVL PAKRIRDANS RGGGDDDDDD KEDEKNDSCG
201: GGSALACTRV VNASSSGLET SHLPPEISSP AVFRCMRVSS IDDEDEEYAY QTAVSIGGHV FKGILYDQGP SSDHHRYSSS LNGETSHQHH LNLMDSTPSA
301: ATTNAVTAVN TNNGSIDPSS LYTAVATPFN AFVAGGTPFF ASSRC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)