AT1G19790.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : SHI-related sequence 7 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
A member of SHI gene family. Arabidopsis thaliana has ten members that encode proteins with a RING finger-like zinc finger motif. Despite being highly divergent in sequence, many of the SHI-related genes are partially redundant in function and synergistically promote gynoecium, stamen and leaf development in Arabidopsis. | ||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
SHI-related sequence 7 (SRS7); CONTAINS InterPro DOMAIN/s: Lateral Root Primordium type 1, C-terminal (InterPro:IPR006511), Zinc finger, Lateral Root Primordium type 1 (InterPro:IPR006510), Protein of unknown function DUF702 (InterPro:IPR007818); BEST Arabidopsis thaliana protein match is: SHI-related sequence 5 (TAIR:AT1G75520.1); Has 184 Blast hits to 184 proteins in 22 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 8; Plants - 174; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:6838400..6839831 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 37930.30 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.66 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.81 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 345 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAGLFYLGGR DHNKQDHHQE KDHNEDKSNN YLYLYKDEIY NNNKGFEIFP PQYFQQQQQQ NHAAAPTNLY SFGMVPSGGN INNNRSTNRS LYFNVVSDHE 101: PVRSSTGGFT VTRQGNMNCQ DCGNQAKKDC PHMRCRTCCK SRGFDCQTHV KSTWVSAAKR RERQAQLAVL PAKRIRDANS RGGGDDDDDD KEDEKNDSCG 201: GGSALACTRV VNASSSGLET SHLPPEISSP AVFRCMRVSS IDDEDEEYAY QTAVSIGGHV FKGILYDQGP SSDHHRYSSS LNGETSHQHH LNLMDSTPSA 301: ATTNAVTAVN TNNGSIDPSS LYTAVATPFN AFVAGGTPFF ASSRC |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)