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AT1G68480.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : C2H2 and C2HC zinc fingers superfamily protein
Curator
Summary (TAIR10)
Encodes a putative zinc finger transcription factor that is necessary for proper lateral organ shape and is sufficient to induce the proliferation of lateral organ tissue. Together with NUB, it is involved in stamen and carpel development.
Computational
Description (TAIR10)
JAGGED (JAG); CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: C2H2 and C2HC zinc fingers superfamily protein (TAIR:AT1G13400.1); Has 723 Blast hits to 723 proteins in 72 species: Archae - 0; Bacteria - 6; Metazoa - 56; Fungi - 19; Plants - 626; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).
Protein Annotations
BioGrid:28398eggNOG:ENOG410IY2NeggNOG:ENOG410XVEZEMBL:AC011915
EMBL:AY465924EMBL:CP002684EnsemblPlants:AT1G68480EnsemblPlants:AT1G68480.1
entrez:843177GeneID:843177Genevisible:Q6S591GO:GO:0003700
GO:GO:0005634GO:GO:0006355GO:GO:0009908GO:GO:0009965
GO:GO:0010093GO:GO:0010158GO:GO:0046872GO:GO:0048440
GO:GO:0048443GO:GO:0048653Gramene:AT1G68480.1hmmpanther:PTHR26374
hmmpanther:PTHR26374:SF180HOGENOM:HOG000090887InParanoid:Q6S591InterPro:IPR007087
InterPro:IPR031113KEGG:ath:AT1G68480OMA:INRFQDHPANTHER:PTHR26374:SF180
PaxDb:Q6S591Pfam:Q6S591Pfscan:PS50157PhylomeDB:Q6S591
PIR:H96708PRIDE:Q6S591PRO:PR:Q6S591PROSITE:PS00028
PROSITE:PS50157ProteinModelPortal:Q6S591Proteomes:UP000006548RefSeq:NP_177015.3
scanprosite:PS00028SMR:Q6S591STRING:3702.AT1G68480.1SUPFAM:SSF57667
TAIR:AT1G68480tair10-symbols:JAGUniGene:At.35517UniProt:Q6S591
Coordinates (TAIR10) chr1:-:25684543..25685932
Molecular Weight (calculated) 28381.00 Da
IEP (calculated) 8.31
GRAVY (calculated) -0.99
Length 253 amino acids
Sequence (TAIR10)
(BLAST)
001: MRHEENYLDL NNLPDDFSKD GNKQALEEGS SSGQRKKKGS KEGKDESGKV YECRFCSLKF CKSQALGGHM NRHRQERETE TLNQARQLVY RNDTITPPGI
101: SPFGYHHTTD PTIYRSVYSS PMIYPGSSST NLVPQPPMPP PPPPYPYSSN QYSPHNHFND YYLNPSFRGS RSISPSPNLP TTTTVDYMAD SPVEPGYTCV
201: GAPIGPTGFP IRGPSIVRAP LEPPQGRDGD ASRQRLDHSL RFPINRFQDH HSL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)