AT1G14280.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.987 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : phytochrome kinase substrate 2 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes phytochrome kinase substrate 2. PKS proteins are critical for hypocotyl phototropism. Forms a complex with Phot1, Phot2 and NPH3. | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
phytochrome kinase substrate 2 (PKS2); BEST Arabidopsis thaliana protein match is: phytochrome kinase substrate 1 (TAIR:AT2G02950.1); Has 337 Blast hits to 325 proteins in 29 species: Archae - 0; Bacteria - 2; Metazoa - 13; Fungi - 6; Plants - 286; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:4877657..4878985 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 49133.40 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.89 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.67 | ||||||||||||||||||||||||||||||||||||||||
| Length | 442 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVTLTSSSST PNVSFDFMMN NNNNSNNLYG PFSSSSTSFS YLTSKEDALT QKNLMSGITN DVLGINKKAS EDLEISVFGA EKYFNGDMDS DHSPRLVSPL 101: PDPEVPIERI FVGPKQSSKN SSETPSLRSE SSWNSQSLLL QSKYVEKKKN IKKNSSCNSY FQEKDMSSNH KVSNKKSFLA TLGCRCVCSN WSSVDVVDDK 201: RRSSGLKKIK TQLSFSGDLS SEMKIHQQQQ EAMLEQRKSL EIFGSPLIEK RIIQKKFPWE YSSSAKKEEH GFSVKYEEEE DGSVSDVSTD LFEIESLTGK 301: ANPFLARQGS SDPDSPDGYA PSEVSIQWSV VTASVADFSV MSECATSPVK KNRSFQIPRI PIMAKSNREI APQRRKSSSS GLLMGCKSHK SVRVSGDSYT 401: SMNRTPSYVP RFPVEANPTS TETRRRISSS SVSHTQSPFL YT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)