AT5G43290.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : WRKY DNA-binding protein 49 | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
member of WRKY Transcription Factor; Group II-c | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
WRKY DNA-binding protein 49 (WRKY49); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent, regulation of transcription; CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY DNA-binding protein 57 (TAIR:AT1G69310.2); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:17371987..17373083 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 31582.20 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.92 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.87 | ||||||||||||||||||||||||||||||||||||||||
| Length | 274 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEEEGYQWAR RCGNNAVEDP FVYEPPLFFL PQDQHHMHGL MPNEDFIANK FVTSTLYSGP RIQDIANALA LVEPLTHPVR EISKSTVPLL ERSTLSKVDR 101: YTLKVKNNSN GMCDDGYKWR KYGQKSIKNS PNPRSYYKCT NPICNAKKQV ERSIDESNTY IITYEGFHFH YTYPFFLPDK TRQWPNKKTK IHKHNAQDMN 201: KKSQTQEESK EAQLGELTNQ NHPVNKAQEN TPANLEEGLF FPVDQCRPQQ GLLEDVVAPA MKNIPTRDSV LTAS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)