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AT1G22130.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : AGAMOUS-like 104
Curator
Summary (TAIR10)
Encodes a member of the MIKC (MADS box, Keratin binding domain, and C terminal domain containing )family of transcriptional regulators. AGL104 is expressed in pollen.It forms heterodimers with other MICK family members (AGL65 and AGL30). Involved in late stages of pollen development and pollen tube growth.
Computational
Description (TAIR10)
AGAMOUS-like 104 (AGL104); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: pollen development; LOCATED IN: nucleus; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 66 (TAIR:AT1G77980.1); Has 6115 Blast hits to 6115 proteins in 750 species: Archae - 0; Bacteria - 0; Metazoa - 621; Fungi - 304; Plants - 5113; Viruses - 0; Other Eukaryotes - 77 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5068eggNOG:KOG0014EMBL:AB094115EMBL:AC069252
EMBL:CP002684EMBL:DQ056457EnsemblPlants:AT1G22130EnsemblPlants:AT1G22130.1
entrez:838818GeneID:838818Genevisible:Q9LM46GO:GO:0003677
GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0010152
GO:GO:0080092Gramene:AT1G22130.1hmmpanther:PTHR11945hmmpanther:PTHR11945:SF154
HOGENOM:HOG000242882InParanoid:Q9LM46InterPro:IPR002100KEGG:ath:AT1G22130
ncoils:CoilOMA:NQTHLFDPaxDb:Q9LM46Pfam:PF00319
Pfscan:PS50066PhylomeDB:Q9LM46PIR:A86354PRINTS:PR00404
PROSITE:PS00350PROSITE:PS50066ProteinModelPortal:Q9LM46Proteomes:UP000006548
RefSeq:NP_173632.1scanprosite:PS00350SMART:SM00432SMR:Q9LM46
STRING:3702.AT1G22130.1SUPFAM:SSF55455TAIR:AT1G22130tair10-symbols:AGL104
UniGene:At.41619UniProt:Q9LM46
Coordinates (TAIR10) chr1:-:7812387..7814259
Molecular Weight (calculated) 38280.90 Da
IEP (calculated) 4.64
GRAVY (calculated) -0.65
Length 335 amino acids
Sequence (TAIR10)
(BLAST)
001: MGRVKLEIKR IENTTNRQVT FSKRRNGLIK KAYELSILCD IDIALIMFSP SDRLSLFSGK TRIEDVFSRF INLPKQERES ALYFPDQNRR PDIQNKECLL
101: RILQQLKTEN DIALQVTNPA AINSDVEELE HEVCRLQQQL QMAEEELRRY EPDPIRFTTM EEYEVSEKQL LDTLTHVVQR RDHLMSNHLS SYEASTMQPN
201: IGGPFVNDVV EGWLPENGTN QTHLFDASAH SNQLRELSSA MYEPLLQGSS SSSNQNNMSE CHVTNHNGEM FPEWAQAYSS SALFASMQQQ HEGVGPSIEE
301: MMPAQQSDIP GVTAETQVDH EVSDYETKVP QLSSQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)