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AT2G03060.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : AGAMOUS-like 30
Curator
Summary (TAIR10)
Encodes a member of the MIKC (MADS box, Keratin binding domain, and C terminal domain containing )family of transcriptional regulators. AGL30 is expressed in pollen.It forms heterodimers with other MICK family members.
Computational
Description (TAIR10)
AGAMOUS-like 30 (AGL30); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: pollen development; LOCATED IN: nucleus; EXPRESSED IN: petal, leaf whorl, male gametophyte, flower, pollen tube; EXPRESSED DURING: M germinated pollen stage, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 94 (TAIR:AT1G69540.1); Has 5791 Blast hits to 5791 proteins in 704 species: Archae - 0; Bacteria - 0; Metazoa - 613; Fungi - 306; Plants - 4796; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink).
Protein Annotations
EMBL:CP002685EnsemblPlants:AT2G03060EnsemblPlants:AT2G03060.1entrez:814835
ExpressionAtlas:F4IS82GeneID:814835GO:GO:0003677GO:GO:0005634
GO:GO:0006351GO:GO:0006355Gramene:AT2G03060.1hmmpanther:PTHR11945
hmmpanther:PTHR11945:SF169InterPro:IPR002100Pfam:PF00319Pfscan:PS50066
PRIDE:F4IS82PRINTS:PR00404PROSITE:PS50066ProteinModelPortal:F4IS82
Proteomes:UP000006548RefSeq:NP_178406.2SMART:SM00432SMR:F4IS82
SUPFAM:SSF55455TAIR:AT2G03060tair10-symbols:AGL30UniGene:At.41433
UniProt:F4IS82
Coordinates (TAIR10) chr2:+:901614..903639
Molecular Weight (calculated) 37594.40 Da
IEP (calculated) 6.99
GRAVY (calculated) -0.65
Length 332 amino acids
Sequence (TAIR10)
(BLAST)
001: MGRVKLKIKK LENTNGRQST FAKRKNGILK KANELSILCD IDIVLLMFSP TGKAAICCGT RRCFSFESSE LEENFPKVGS RCKYTRIYSL KDLSTQARIL
101: QARISEIHGR LSYWTEPDKI NNVEHLGQLE ISIRQSLDQL RAHKMQDGIQ IPLEQQLQSM SWILNSNTTN IVTEEHNSIP QREVECSASS SFGSYPGYFG
201: TGKSPEMTIP GQETSFLDEL NTGQLKQDTS SQQQFTNNNN ITAYNPNLHN DMNHHQTLPP PPLPLTLPHA QVYIPMNQRE YHMNGFFEAP PPDSSAYNDN
301: TNQTRFGSSS SSLPCSISMF DEYLFSQMQQ PN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)