AT2G20440.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.939 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Ypt/Rab-GAP domain of gyp1p superfamily protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Ypt/Rab-GAP domain of gyp1p superfamily protein; FUNCTIONS IN: RAB GTPase activator activity; INVOLVED IN: regulation of Rab GTPase activity; LOCATED IN: intracellular; EXPRESSED IN: male gametophyte, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage; CONTAINS InterPro DOMAIN/s: RabGAP/TBC (InterPro:IPR000195); BEST Arabidopsis thaliana protein match is: Ypt/Rab-GAP domain of gyp1p superfamily protein (TAIR:AT4G28550.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:8811034..8813251 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 49364.40 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 8.14 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.45 | ||||||||||||||||||||||||||||
| Length | 425 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MFCCGFMWKS GGEDLQGFYP VRPECQPDVP RTRFKSRAGK TLSARRWHAA FTEDGHLDME KVLRRIQRGG IHPSIKGAVW EFLLGCYDPD STFEERNILR 101: NRRREQYGAW KEECKKMVPV IGSGKYVTMA VVQENGNPID ESSVENQGWI VKNTVTDERV LQWMLSLHQI GLDVARTDRY LCFYENDRNQ SKLWDVLAIY 201: TWLNLDIGYV QGMNDICSPM IILFDDEGDA FWCFERAMRR LRENFRATAT SMGVQTQLGV LSQVIKTVDP RLHQHLEDLD GGEYLFAIRM LMVLFRREFS 301: FLDALYLWEL MWAMEYNPTM FATYEELENR NNAASDPKLL KRYGKFERKY INSGQNEQHR NTLAVFVVAS VLQTKNKRLL KEAKGLDDVV QILGDIAGNL 401: DAKKACKEAL KIHEKFLKKA NSNKQ |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)