AT5G41110.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G26890.5); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:16452598..16454989 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 68747.90 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 8.67 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.61 | ||||||||||||||||||||||||||||
| Length | 621 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGLPHTASNE QAHEALSAPS CSLSQSLPVN ATSCDSDGIN RGNEGSFRFS IGESDRKTAV ESLEFRDDLW RFHDTRSVTS LPAHEPTYAM DKVNLSRTEV 101: RRIVGFESNE VSSVSNEYTS ITVNRTGGSN EVDIIGGSLV RKRVSSPLNK LFPEKFRGDS LDISHSNQPM TSAGLPKGFH IPVGQDHKKA NISGRLRLFT 201: TSNCSEWGND TSHTGKLSST VFTDGPLLDS NDLQPSQDVH CLYSPVHETF QVPNKPLPCH RNISVSPPLS LSPLGPRFSE RMKALQGGLN GNIFEDDVCL 301: KNTGEEAELR TGHRSFDDTN GIQRAFSMDR AIESVPTSPC KRFSRSLSGR PIQRSLVGSF EESLFSGRLS YGQANQKIDG FLAILSIAGG NISPKSQKLP 401: FSVTSVGDDC FLLYYASIDL SGGSLPSKLW GQKLKTNQNK SDAQTINKRL RIPMKGRIQL VLSNPEKTPL HTFLCNYDLT DMPHGTKTFL RQKVTLASSV 501: PTKAKKSANK GSEGSELVDE LHSPNECGNK NCRETYRETG QRCSKSGVLR YALHLKFICP LRKKASKLGQ KKSLDAGDDG ERRFYLYNEL RVVFPQRHTD 601: SDEGKLNVEY HYPENPRYFD V |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)