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AT1G75710.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : C2H2-like zinc finger protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
C2H2-like zinc finger protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding, nucleic acid binding; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: zinc finger protein-related (TAIR:AT5G54630.1); Has 773 Blast hits to 521 proteins in 53 species: Archae - 0; Bacteria - 0; Metazoa - 59; Fungi - 55; Plants - 387; Viruses - 0; Other Eukaryotes - 272 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IKBSeggNOG:ENOG410YENAEMBL:AC006434EMBL:CP002684
EnsemblPlants:AT1G75710EnsemblPlants:AT1G75710.1entrez:843905Gene3D:3.90.228.10
GeneID:843905GO:GO:0003700GO:GO:0003950GO:GO:0006355
GO:GO:0046872Gramene:AT1G75710.1hmmpanther:PTHR31681hmmpanther:PTHR31681:SF1
HOGENOM:HOG000239323InterPro:IPR007087InterPro:IPR012317KEGG:ath:AT1G75710
OMA:SPRVCACPfscan:PS50157PhylomeDB:Q9LR10PROSITE:PS00028
PROSITE:PS50157Proteomes:UP000006548RefSeq:NP_177700.1scanprosite:PS00028
SUPFAM:SSF56399TAIR:AT1G75710UniGene:At.47595UniProt:Q9LR10
Coordinates (TAIR10) chr1:+:28428806..28431128
Molecular Weight (calculated) 49904.10 Da
IEP (calculated) 9.73
GRAVY (calculated) -0.48
Length 462 amino acids
Sequence (TAIR10)
(BLAST)
001: MALLTFLPEN AEAPQKHKPT SSKRKKRDNP TDQTQTQKHK PQKPKKAVPP KQPSSWDQIK NLLTCKQIEG SRVHDPSKNS QSGPSMTTNL SPSKLGSSCS
101: SICSFRDVAH GNTRVVHRAD HSPDVGNSAT PNSETRLLTR KPGQHGSSSS RSLTSGSTRS NASGSYTSSS TTSFRAMQFR KLSGCYECHM IVDPSRYPIS
201: PRVCACSQCG EVFPKLESLE LHQAVRHAVS ELGPEDSGRN IVEIIFKSSW LKKDSPICQI ERILKVHNTQ RTIQRFEDCR DAVKARALQA TRKDARCAAD
301: GNELLRFHCT TLTCSLGARG SSSLCSNLPV CGVCTVIRHG FQGKSGGGGA NVANAGVRTT ASSGRADDLL RCSDDARRVM LVCRVIAGRV KRVDLPAADA
401: SATAEKKSTV EDNSVVGVSS SGGTFDSVAV NAGVYSNLEE LVVYNPRAIL PCFVVIYKVL ES
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)