AT2G22890.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:plastid 0.994 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : Kua-ubiquitin conjugating enzyme hybrid localisation domain | ||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
Kua-ubiquitin conjugating enzyme hybrid localisation domain; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Kua-ubiquitin conjugating enzyme hybrid, localisation (InterPro:IPR019547); BEST Arabidopsis thaliana protein match is: fatty acid desaturase A (TAIR:AT4G27030.1); Has 226 Blast hits to 226 proteins in 95 species: Archae - 0; Bacteria - 21; Metazoa - 120; Fungi - 0; Plants - 47; Viruses - 3; Other Eukaryotes - 35 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr2:-:9742500..9743339 | ||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 31506.80 Da | ||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 7.75 | ||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.08 | ||||||||||||||||||||||||||||||||||||||||
Length | 279 amino acids | ||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MATSLQTKYT LNPITNNIPR SHRPSFLRVT STTNSQPNHE MKLVVEQRLV NPPLSNDPTL QSTWTHRLWV AAGCTTVFVS FSKSIIGAFG SHLWLEPSLA 101: GFAGYILADL GSGVYHWATD NYGDESTPLV GIHIEDSQDH HKCPWTITKR QFANNLHFMA RGTTLIVLPL DLAFDDHVVH GFVSMFAFCV LFCQLFHAWA 201: HGTKSKLPPL VVGLQDIGLL VSRIHHMNHH RAPYNNNYCV VSGVWNKVLD ESNVFKAMEM VLYIQLGVRP RSWTEPNYE |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)