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AT2G22890.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 0.994
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Kua-ubiquitin conjugating enzyme hybrid localisation domain
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Kua-ubiquitin conjugating enzyme hybrid localisation domain; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Kua-ubiquitin conjugating enzyme hybrid, localisation (InterPro:IPR019547); BEST Arabidopsis thaliana protein match is: fatty acid desaturase A (TAIR:AT4G27030.1); Has 226 Blast hits to 226 proteins in 95 species: Archae - 0; Bacteria - 21; Metazoa - 120; Fungi - 0; Plants - 47; Viruses - 3; Other Eukaryotes - 35 (source: NCBI BLink).
Protein Annotations
EC:1.14.19.-eggNOG:ENOG410XRWReggNOG:KOG3011EMBL:AC004786
EMBL:AY600553EMBL:AY649287EMBL:CP002685EnsemblPlants:AT2G22890
EnsemblPlants:AT2G22890.1entrez:816820GeneID:816820Genevisible:O81006
GO:GO:0006631GO:GO:0016021GO:GO:0016491GO:GO:0031969
hmmpanther:PTHR24067hmmpanther:PTHR24067:SF41HOGENOM:HOG000012766InParanoid:O81006
InterPro:IPR019547KEGG:ath:AT2G22890KO:K10704OMA:MQTESTQ
PaxDb:O81006Pfam:O81006Pfam:PF10520PhylomeDB:O81006
PIR:B84618PRIDE:O81006PRO:PR:O81006ProteinModelPortal:O81006
Proteomes:UP000006548RefSeq:NP_179874.1STRING:3702.AT2G22890.1TAIR:AT2G22890
TMHMM:TMhelixUniGene:At.50743UniPathway:UPA00199UniProt:O81006
Coordinates (TAIR10) chr2:-:9742500..9743339
Molecular Weight (calculated) 31506.80 Da
IEP (calculated) 7.75
GRAVY (calculated) -0.08
Length 279 amino acids
Sequence (TAIR10)
(BLAST)
001: MATSLQTKYT LNPITNNIPR SHRPSFLRVT STTNSQPNHE MKLVVEQRLV NPPLSNDPTL QSTWTHRLWV AAGCTTVFVS FSKSIIGAFG SHLWLEPSLA
101: GFAGYILADL GSGVYHWATD NYGDESTPLV GIHIEDSQDH HKCPWTITKR QFANNLHFMA RGTTLIVLPL DLAFDDHVVH GFVSMFAFCV LFCQLFHAWA
201: HGTKSKLPPL VVGLQDIGLL VSRIHHMNHH RAPYNNNYCV VSGVWNKVLD ESNVFKAMEM VLYIQLGVRP RSWTEPNYE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)