AT1G69610.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Protein of unknown function (DUF1666) | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: N-terminal protein myristoylation, translation; LOCATED IN: ribosome, intracellular; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L34e (InterPro:IPR008195), Protein of unknown function DUF1666 (InterPro:IPR012870); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1666) (TAIR:AT5G39785.1); Has 289 Blast hits to 276 proteins in 65 species: Archae - 3; Bacteria - 18; Metazoa - 43; Fungi - 27; Plants - 92; Viruses - 0; Other Eukaryotes - 106 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:26186954..26189349 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 74329.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.99 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.65 | ||||||||||||||||||||||||||||||||
| Length | 636 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGIVTTKTKT YTTTNFDFSN KGFGVGGLKQ FVYGNTFIVL DAFWVSFSNL FRVNPDKETS LVLFEKQNTK DSSVFGDHQD QNQICGTQDD DQMESSLVSI 101: SKRCEFYSDN KSIVGFVEEP KAFSFKFHEY SAITVQEEEK KKMVSFSDEK TSSMVLEKSE SDGFMKEHVK EEMLVYEFMS CGVLKESLVH ENLVGGEDNL 201: FDDDDGFIEL NPSLQISNFA YGEEEEEEFI HREEEMKMGF DEQEEVYDEF DDGSDSDDDE FEHSDVIEKL KTELRTARTG GLCTILEESE TPLQELKPLK 301: IEPKPDQHKD RIAEIHKVYK NYAVKMRKLD VIDSQTMHSI SLLKLKDSSK PSRNTDKPPK SSLHQNIWPF KKHTLECDPS ERLVKEASRD FETVYVGQVC 401: LSWEMLRWQY DKVLEFDSQV TTYQYNLVAG EFQLFQVLLQ RFVENEPFQN SSRVETYLKN RRHFQNFLQI PLVRDDRSSK KKCRYEGEFA VKTEMLREII 501: RESMSVFWEF LCADKDEFTS MMKVSHQTQV SPQDSLDLEL LTDIRTHLQK KEKKLKEIQR SQSCIVKKLK KNESKSSIGV KDELLIAKIE LRLVSRVMYM 601: SKLTTEKLHW CQEKLEKISF NGRKIHMEPY FSLLPC |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)