AT5G54840.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.847 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Ras-related small GTP-binding family protein | ||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Monomeric G protein. Expressed in the root quiescent center, flowers, and leaf guard cells and hydathodes. | ||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
SGP1; FUNCTIONS IN: GTP binding; INVOLVED IN: small GTPase mediated signal transduction; LOCATED IN: intracellular; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ras GTPase (InterPro:IPR001806), Small GTP-binding protein (InterPro:IPR005225), Small GTPase (InterPro:IPR020851), Mitochondrial Rho-like (InterPro:IPR013684), GTPase, Tem1 (InterPro:IPR017231); BEST Arabidopsis thaliana protein match is: Ras-related small GTP-binding family protein (TAIR:AT3G21700.3); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:22276611..22278328 | ||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 32832.70 Da | ||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.70 | ||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.05 | ||||||||||||||||||||||||||||||||||||||||
| Length | 288 amino acids | ||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAEKVHEIAG KITPFCRKIV HVNRKWRIIE RVSIFGDFFR FLWRKIVSCS SIIEKPILYR RIVHKISSTA GDIFDGDDDT TTEPTVSGRR FGSSSDSDLV 101: SLKISLLGDC QTGKTTFVVK YVGDENQSFL EMTGLNLMDK TFYVQGVTIS FSIWDVGGDE KRSKDHIPIA CKDAVAILFM FDLTSRSTLN SVFGWYSQAR 201: KWNKTAIPIL IGTKFDDFVR LPPNLQWTIV TQARAYAKVM NASLFFSSAT HNINVNKIFK FILARLFNLP WKIDRNLTLG EPIIDYDS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)