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AT5G38430.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31932409 (2020): plastid
  • PMID:31871212 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:31186290 (2019): plastid plastid stroma
  • PMID:30962257 (2019): plastid
  • PMID:30865669 (2019): plastid
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30447334 (2019): plasma membrane
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24872594 (2014): plastid plastid envelope
  • PMID:24748391 (2014): plastid
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:23851315 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:23390424 (2013): plastid plastid envelope
  • PMID:22215637 (2012): plasma membrane
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:21531424 (2011): plastid
  • PMID:21311031 (2011): plastid
  • PMID:21311031 (2011): mitochondrion
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:19334764 (2009): plasma membrane
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:16923014 (2006): plastid plastid stroma
  • PMID:16648217 (2006): plastid
  • PMID:16207701 (2006): plastid
  • PMID:15028209 (2004): plastid
  • PMID:12938931 (2003): plastid
  • PMID:12766230 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Ribulose bisphosphate carboxylase (small chain) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)		 Ribulose bisphosphate carboxylase (small chain) family protein; FUNCTIONS IN: ribulose-bisphosphate carboxylase activity; INVOLVED IN: carbon fixation, response to blue light, response to red light, response to far red light; LOCATED IN: in 7 components; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Ribulose bisphosphate carboxylase, small chain (InterPro:IPR000894); BEST Arabidopsis thaliana protein match is: Ribulose bisphosphate carboxylase (small chain) family protein (TAIR:AT5G38420.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioCyc:MetaCyc:AT5G38430-MONOMERBioGrid:19081EC:4.1.1.39eggNOG:COG4451
eggNOG:ENOG410IM2HEMBL:AB005248EMBL:AF410283EMBL:AY143814
EMBL:CP002688EMBL:X14564EnsemblPlants:AT5G38430EnsemblPlants:AT5G38430.1
entrez:833830Gene3D:3.30.190.10GeneID:833830Genevisible:P10796
GO:GO:0004497GO:GO:0009507GO:GO:0009570GO:GO:0009579
GO:GO:0009637GO:GO:0009853GO:GO:0009941GO:GO:0010114
GO:GO:0010218GO:GO:0016020GO:GO:0016984GO:GO:0019253
GO:GO:0031969GO:GO:0048046Gramene:AT5G38430.1gramene_plant_reactome:1119519
gramene_plant_reactome:6877215hmmpanther:PTHR31262hmmpanther:PTHR31262:SF4HOGENOM:HOG000141332
InParanoid:P10796IntAct:P10796InterPro:IPR000894InterPro:IPR024680
InterPro:IPR024681KEGG:00630+4.1.1.39KEGG:00710+4.1.1.39KEGG:ath:AT5G38430
KO:K01602OMA:HRENGNSPaxDb:P10796Pfam:P10796
Pfam:PF00101Pfam:PF12338PhylomeDB:P10796PIR:S03717
PRIDE:P10796PRINTS:PR00152PRO:PR:P10796ProteinModelPortal:P10796
Proteomes:UP000006548RefSeq:NP_198659.1SMART:SM00961SMR:P10796
STRING:3702.AT5G38430.1SUPFAM:SSF55239TAIR:AT5G38430UniGene:At.25361
UniGene:At.25577UniGene:At.39706UniGene:At.46639UniGene:At.49098
UniGene:At.70032UniGene:At.70053UniGene:At.73308UniProt:P10796
World-2DPAGE:0003:P10796
Coordinates (TAIR10) chr5:-:15384350..15385155
Molecular Weight (calculated) 20287.30 Da
IEP (calculated) 7.83
GRAVY (calculated) -0.19
Length 181 amino acids
Sequence (TAIR10)
(BLAST) 		001: MASSMLSSAA VVTSPAQATM VAPFTGLKSS ASFPVTRKAN NDITSITSNG GRVSCMKVWP PIGKKKFETL SYLPDLTDVE LAKEVDYLLR NKWIPCVEFE
101: LEHGFVYREH GNTPGYYDGR YWTMWKLPLF GCTDSAQVLK EVEECKKEYP GAFIRIIGFD NTRQVQCISF IAYKPPSFTD A
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)