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AT3G14415.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
peroxisome 1.000
ASURE: peroxisome
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31932409 (2020): plastid
  • PMID:31871212 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31186290 (2019): cytosol None
  • PMID:31023727 (2019): mitochondrion
  • PMID:30962257 (2019): plastid
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30135097 (2018): plastid
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:27943495 (2017): mitochondrion
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25641898 (2015): plasma membrane
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24130194 (2013): peroxisome
  • PMID:24124904 (2013): plastid
  • PMID:23851315 (2013): plastid
  • PMID:23750852 (2013): mitochondrion
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:23444301 (2013): mitochondrion
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:21311031 (2011): plastid
  • PMID:21311031 (2011): mitochondrion
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:19334764 (2009): plasma membrane
  • PMID:19329564 (2009): peroxisome
  • PMID:18931141 (2008): peroxisome
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:17951448 (2007): peroxisome
  • PMID:14617066 (2003): nucleus
  • PMID:12154131 (2002): peroxisome
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Aldolase-type TIM barrel family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Aldolase-type TIM barrel family protein; FUNCTIONS IN: glycolate oxidase activity, oxidoreductase activity, FMN binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; LOCATED IN: in 6 components; EXPRESSED IN: cotyledon, fruit, guard cell, juvenile leaf, leaf; EXPRESSED DURING: seedling growth; CONTAINS InterPro DOMAIN/s: Aldolase-type TIM barrel (InterPro:IPR013785), FMN-dependent alpha-hydroxy acid dehydrogenase, active site (InterPro:IPR008259), FMN-dependent dehydrogenase (InterPro:IPR000262), Alpha-hydroxy acid dehydrogenase, FMN-dependent (InterPro:IPR012133); BEST Arabidopsis thaliana protein match is: Aldolase-type TIM barrel family protein (TAIR:AT3G14420.2); Has 11834 Blast hits to 11812 proteins in 1926 species: Archae - 158; Bacteria - 5520; Metazoa - 369; Fungi - 693; Plants - 265; Viruses - 0; Other Eukaryotes - 4829 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G14415-MONOMERBioCyc:ARA:GQT-740-MONOMERBioCyc:ARA:GQT-741-MONOMERBioGrid:5998
EC:1.1.3.15eggNOG:COG1304eggNOG:KOG0538EMBL:AB022220
EMBL:AB028617EMBL:AK221716EMBL:AY058095EMBL:AY136402
EMBL:BT002129EMBL:CP002686EnsemblPlants:AT3G14415EnsemblPlants:AT3G14415.1
EnsemblPlants:AT3G14415.3entrez:820664ExpressionAtlas:Q9LRS0Gene3D:3.20.20.70
GeneID:820664Genevisible:Q9LRS0GO:GO:0005777GO:GO:0009854
GO:GO:0010181GO:GO:0052852GO:GO:0052853GO:GO:0052854
gramene_pathway:1.1.3.15gramene_pathway:PWY-181gramene_plant_reactome:1119596gramene_plant_reactome:6877353
hmmpanther:PTHR10578hmmpanther:PTHR10578:SF70HOGENOM:HOG000217463InParanoid:Q9LRS0
IntAct:Q9LRS0InterPro:IPR000262InterPro:IPR008259InterPro:IPR012133
InterPro:IPR013785PaxDb:Q9LRS0Pfam:PF01070Pfam:Q9LRS0
Pfscan:PS51349PhylomeDB:Q9LRS0PIRSF:PIRSF000138PRIDE:Q9LRS0
PRO:PR:Q9LRS0PROSITE:PS00557PROSITE:PS51349ProteinModelPortal:Q9LRS0
Proteomes:UP000006548Reactome:R-ATH-389661Reactome:R-ATH-390918RefSeq:NP_001189892.1
RefSeq:NP_188059.1scanprosite:PS00557SMR:Q9LRS0STRING:3702.AT3G14415.2
SUPFAM:SSF51395TAIR:AT3G14415UniGene:At.20363UniGene:At.67927
UniPathway:UPA00951UniProt:Q9LRS0
Coordinates (TAIR10) chr3:+:4818667..4820748
Molecular Weight (calculated) 40308.80 Da
IEP (calculated) 9.40
GRAVY (calculated) -0.03
Length 367 amino acids
Sequence (TAIR10)
(BLAST)
001: MEITNVTEYD AIAKAKLPKM VYDYYASGAE DQWTLQENRN AFARILFRPR ILIDVNKIDM ATTVLGFKIS MPIMVAPTAF QKMAHPDGEY ATARAASAAG
101: TIMTLSSWAT SSVEEVASTG PGIRFFQLYV YKNRKVVEQL VRRAEKAGFK AIALTVDTPR LGRRESDIKN RFTLPPNLTL KNFEGLDLGK MDEANDSGLA
201: SYVAGQIDRT LSWKDIQWLQ TITNMPILVK GVLTGEDARI AIQAGAAGII VSNHGARQLD YVPATISALE EVVKATQGRV PVFLDGGVRR GTDVFKALAL
301: GASGIFIGRP VVFALAAEGE AGVKKVLQML RDEFELTMAL SGCRSLSEIT RNHIVTEWDT PRHLPRL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)