AT5G09320.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.709 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Vacuolar sorting protein 9 (VPS9) domain | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
VPS9B; CONTAINS InterPro DOMAIN/s: Vacuolar sorting protein 9, subgroup (InterPro:IPR013995), Vacuolar sorting protein 9 (InterPro:IPR003123); BEST Arabidopsis thaliana protein match is: Vacuolar sorting protein 9 (VPS9) domain (TAIR:AT3G19770.1); Has 1393 Blast hits to 1376 proteins in 227 species: Archae - 0; Bacteria - 0; Metazoa - 508; Fungi - 217; Plants - 509; Viruses - 0; Other Eukaryotes - 159 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:2889007..2892016 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 80141.90 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.72 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.28 | ||||||||||||||||||||||||||||||||
| Length | 712 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MENTDVVSGL HNFLSKPSAK DFIKSIKSFI VSILNTAPDP EKDCDAVQDF FYKMESAFRA HPLWSGCSDD ELDNAGDGLE KYVMTKLFPR VFASNTEDVI 101: SDEKLFQKIS LVQQFISPEN LDIQPTFQNQ TSWLLAQKEL QKINMYNAPR DKLMCILRCC KVINNLLLNA SIASNQNEPG ADQFLPVLIY VTIKANPPQF 201: HSNLLYIQRY RRQSKLVGEA GYLFTNILSA ESFISNIDAK SLSMDEADFE TKMKSAHARL SGPGSQSYQT DHGAALPTAH NTKRENMLLH TKSTDSFSGT 301: NETLSETPIK KADPITDLEN KGAATLLNDR SEATKIFQEY PYMFASVGDL KIGDVEDLLN NYKQLVFKYV CLSKGLGDAT SLTPCISPLQ ASKVSENHTT 401: LSSDFQTKSE TDRSVDNLFR ALQGYYCNFA SFSAPLPFPH HSEEQSLTAT MEGIGLRSCG DDILRLGFKL RGGTGGRIQI LQRAMVIKMR DRSKNRKPLQ 501: RGRMLSIEAI QAVQALKRAN PLLPPPPVPS TSTTSSSSAL LDRVIISKFR RLLKFDMVAV LRELLRQNEC SLALKVFEEI RKEYWYKPQV RMYTDMITVM 601: ADNSLMEEVN YLYSAMKSEK GLMAEIEWFN TLLTILLNHK LFDLVMDCYA FMQSIGYEPD RASFRVLVLG LESNGEMGLS AIVRQDAHEY YGESLEFIEE 701: DEEISSGTSV LI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)