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AT3G06410.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Zinc finger C-x8-C-x5-C-x3-H type family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Zinc finger C-x8-C-x5-C-x3-H type family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: Zinc finger C-x8-C-x5-C-x3-H type family protein (TAIR:AT5G18550.1); Has 3128 Blast hits to 1576 proteins in 227 species: Archae - 0; Bacteria - 85; Metazoa - 789; Fungi - 248; Plants - 1012; Viruses - 7; Other Eukaryotes - 987 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5063eggNOG:KOG1677EMBL:AC011623EMBL:AK230312
EMBL:AK230438EMBL:CP002686EnsemblPlants:AT3G06410EnsemblPlants:AT3G06410.1
entrez:819815Gene3D:4.10.1000.10GeneID:819815Genevisible:Q9SQU4
GO:GO:0003677GO:GO:0005634GO:GO:0046872Gramene:AT3G06410.1
hmmpanther:PTHR12506hmmpanther:PTHR12506:SF27HOGENOM:HOG000237733InParanoid:Q9SQU4
InterPro:IPR000571KEGG:ath:AT3G06410OMA:PDMSAPKPaxDb:Q9SQU4
Pfam:PF00642Pfam:Q9SQU4Pfscan:PS50103PhylomeDB:Q9SQU4
PRO:PR:Q9SQU4PROSITE:PS50103ProteinModelPortal:Q9SQU4Proteomes:UP000006548
RefSeq:NP_187292.2SMART:SM00356SMR:Q9SQU4STRING:3702.AT3G06410.1
SUPFAM:SSF90229TAIR:AT3G06410UniGene:At.27771UniProt:Q9SQU4
Coordinates (TAIR10) chr3:-:1947471..1949528
Molecular Weight (calculated) 48854.30 Da
IEP (calculated) 8.05
GRAVY (calculated) -0.49
Length 462 amino acids
Sequence (TAIR10)
(BLAST)
001: MERYGRPGEE GSRSDPSLEW TSHGGETAVE APMWRLGLSG GGGGGGGGES YPERPDEPDC IYYLRTGVCG YGSRCRFNHP RDRGAVIGGV RGEAGALPER
101: MGHPVCQHFM RTGTCKFGAS CKYHHPRQGG GGGSVAPVSL SYLGYPLRPG EKECSYYLRT GQCKFGLTCR FNHPVPLAVQ GPPQQPQQQQ PQPQPQLQTI
201: YPTLQSQSIP SSQQYGLVLT RPSFLTGSYL QSPYGPPMVL PPGMVPYSGW NPYQASLSAM PSPGTQPSIG SSSIYGLTPL SPSATAYTGT YQSVPSSNST
301: SKEFPQRPDQ PECQYFMRTG DCKFGSSCRY HHPVDAVPPK TGIVLSSIGL PLRPGVAQCT HFAQHGICKF GPACKFDHSM SSSLSYSPSA SSLTDMPVAP
401: YPIGSSSLSG SSAPVSSSNE PTKEAVTPAV SSMVSGLSRP EPAETSGDSA SVSGSIEAKT SS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)