AT5G18550.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Zinc finger C-x8-C-x5-C-x3-H type family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Zinc finger C-x8-C-x5-C-x3-H type family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 17 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571); BEST Arabidopsis thaliana protein match is: Zinc finger C-x8-C-x5-C-x3-H type family protein (TAIR:AT3G06410.1); Has 2990 Blast hits to 1278 proteins in 210 species: Archae - 0; Bacteria - 30; Metazoa - 599; Fungi - 302; Plants - 1043; Viruses - 0; Other Eukaryotes - 1016 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:6160515..6162729 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 49466.60 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.85 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.58 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 465 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MERYGGAGED ESRSDPSHEW SAQGTETGIE ASMWRLGLRG GGGGGETFPE RPDEPDCIYY LRTGVCGYGS RCRFNHPRNR APVLGGLRTE AGEFPERMGQ 101: PVCQHFMRTG TCKFGASCKY HHPRQGGGGD SVTPVSLNYM GFPLRPGEKE CSYFMRTGQC KFGSTCRYHH PVPPGVQAPS QQQQQQLSAG PTMYPSLQSQ 201: TVPSSQQYGV VLARPQLLPG SYVQSPYGYG QMVLPPGMVP YSGWNPYQAS VSAMPSPGTQ PSMGTSSVYG ITPLSPSAPA YQSGPSSTGV SNKEQTFPQR 301: PEQPECQYFM RTGDCKFGTS CRFHHPMEAA SPEASTLSHI GLPLRPGAVP CTHFAQHGIC KFGPACKFDH SLGSSSLSYS PSPSSLTDMP VAPYPSSLGT 401: LAPSSSSDQC TELISSSSIE PITTTTGGSE TVAAGVSSMT SDVSHPEPAE TNKGDSASNE AKTSS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)