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AT2G38090.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Duplicated homeodomain-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Duplicated homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), SANT, eukarya (InterPro:IPR017884), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-related (InterPro:IPR012287), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: Homeodomain-like transcriptional regulator (TAIR:AT5G58900.1); Has 1891 Blast hits to 1883 proteins in 170 species: Archae - 0; Bacteria - 0; Metazoa - 227; Fungi - 3; Plants - 1444; Viruses - 0; Other Eukaryotes - 217 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5269eggNOG:KOG0724EMBL:AK118135EMBL:AY519529
EMBL:BT006122EMBL:CP002685EnsemblPlants:AT2G38090EnsemblPlants:AT2G38090.1
entrez:818387Gene3D:1.10.10.60GeneID:818387GO:GO:0003677
GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0006355
Gramene:AT2G38090.1hmmpanther:PTHR24078hmmpanther:PTHR24078:SF261HOGENOM:HOG000237920
InterPro:IPR001005InterPro:IPR006447InterPro:IPR009057InterPro:IPR017884
InterPro:IPR017930KEGG:ath:AT2G38090OMA:ETSNWLFPfam:PF00249
Pfscan:PS51293Pfscan:PS51294PhylomeDB:Q8GXN7PROSITE:PS51293
PROSITE:PS51294Proteomes:UP000006548RefSeq:NP_181344.2SMART:SM00717
SMR:Q8GXN7STRING:3702.AT2G38090.1SUPFAM:SSF46689TAIR:AT2G38090
TIGRfam:TIGR01557TIGRFAMs:TIGR01557UniGene:At.46819UniProt:Q8GXN7
Coordinates (TAIR10) chr2:+:15945278..15946775
Molecular Weight (calculated) 33252.30 Da
IEP (calculated) 5.24
GRAVY (calculated) -0.76
Length 298 amino acids
Sequence (TAIR10)
(BLAST)
001: MNRGIEVMSP ATYLETSNWL FQENRGTKWT AEENKKFENA LAFYDKDTPD RWSRVAAMLP GKTVGDVIKQ YRELEEDVSD IEAGLIPIPG YASDSFTLDW
101: GGYDGASGNN GFNMNGYYFS AAGGKRGSAA RTAEHERKKG VPWTEEEHRQ FLMGLKKYGK GDWRNIARNF VTTRTPTQVA SHAQKYFIRQ VNGGKDKRRS
201: SIHDITTVNI PDSPDAAAAD NATANAPCSP PSVGGNQRET SEWEGQTLYD ETAAAFYNQN AFSETLLGMS STPYMAKLQE QSFLNASQFE SYNAYLQM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)