suba logo
AT2G27930.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : PLATZ transcription factor family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
PLATZ transcription factor family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF597 (InterPro:IPR006734); BEST Arabidopsis thaliana protein match is: PLATZ transcription factor family protein (TAIR:AT1G32700.1); Has 406 Blast hits to 406 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 406; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IXPMeggNOG:ENOG410YG8NEMBL:CP002685EnsemblPlants:AT2G27930
EnsemblPlants:AT2G27930.1entrez:817337GeneID:817337Gramene:AT2G27930.1
hmmpanther:PTHR31065hmmpanther:PTHR31065:SF4InParanoid:F4IHN4InterPro:IPR006734
KEGG:ath:AT2G27930ncoils:CoilOMA:INHSTHRPaxDb:F4IHN4
Pfam:PF04640ProteinModelPortal:F4IHN4Proteomes:UP000006548RefSeq:NP_180360.4
SUPFAM:SSF57845TAIR:AT2G27930UniGene:At.52944UniProt:F4IHN4
Coordinates (TAIR10) chr2:+:11892369..11893488
Molecular Weight (calculated) 22038.20 Da
IEP (calculated) 8.92
GRAVY (calculated) -0.77
Length 189 amino acids
Sequence (TAIR10)
(BLAST)
001: MEEPKWLEGL LRTNFFSICP RHRETPRNEC NMFCLSCQNA AFCFYCRSSF HIDHPVLQIR RSSYHDVVRV SEIENALDIR GVQTYVINSA RVLFLNERPQ
101: PKNSSHGAAS STPKTMSYFC ETCCRTLLDP FRFCSLGCKV EGMRKNKEEE EERLRKERQQ ETHKGTHPPT HTSNSRRRKG IPHRAPFAS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)