AT3G20280.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RING/FYVE/PHD zinc finger superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: DNA binding, zinc ion binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT1G50620.1); Has 11431 Blast hits to 6184 proteins in 707 species: Archae - 24; Bacteria - 2884; Metazoa - 3648; Fungi - 2195; Plants - 284; Viruses - 200; Other Eukaryotes - 2196 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:7071475..7074340 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 78996.10 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.25 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.51 | ||||||||||||||||||||||||||||||||||||
| Length | 743 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDIATSNAPM NLESVAMVDG NGAEPVSPPA KKPRFDEEMN RVAEIVLVLS ALGRMRGGET PTALELELMF EARSKLAGMC LEFDPKDIIR KDDVKSVIED 101: LGFNGKLKDQ RLGFRAPTVT ISEKLSLGKR KMEEAEKYPT TSTVSTGYTL SQPNGSLASP GGLANKASVA HQWPSSEVAT ANTSGSHFKL DRPQMVLNGA 201: SQGTPVSSAN YYAEPWSAQL PSTISFSTAP DKKVPIQSSV RTADPSFRPF RHGTFTGTNQ PMHYSQTSSF GGNHTEIAKI IHKFLQPRVK QYPLWNPPSR 301: EYMSRAMACQ ICEVTINEMD TLLICDACEK AYHLKCLQGN NMKGVPKSEW HCSRCVQAFN GKPFPPTYGR ATRAVATTTA KMPFRAAGVL SSSAKKIGPM 401: DIKANQQKPI VSTFSRLQNT GLVSGAATTS QFESASVNAK TTASAAKTTN IGSQGSKENV ACGANSPAPV SLTETPNRTG IASTISVINN GLISKPLTPV 501: GTMSSTSPLP VVNQLPVNAT SNASPSTPIT ASLVAQAPTV TQNGDGSSTA SGTADHSILN ADITTQVHTL TVTSSSNSQQ AVSHSEVAKA TEDAAPLENV 601: SECEKPSEST SHPDSLNDKT ISENVQESSK DAKVDSEACQ NHPTASPATV VPDQDSTITA APSVTQEDSA FNTEKTPPQP LSVSSNYDSQ TEKETPNVQD 701: SVHNVPGDSE KGKGLNGLDD RHQEQPSEPE FYKSDSVKEE NAA |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)