AT1G18560.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : BED zinc finger ;hAT family dimerisation domain | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
BED zinc finger ;hAT family dimerisation domain; FUNCTIONS IN: protein dimerization activity, DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: HAT dimerisation (InterPro:IPR008906), Zinc finger, BED-type predicted (InterPro:IPR003656); BEST Arabidopsis thaliana protein match is: BED zinc finger ;hAT family dimerisation domain (TAIR:AT3G42170.1); Has 1077 Blast hits to 1005 proteins in 94 species: Archae - 0; Bacteria - 2; Metazoa - 242; Fungi - 210; Plants - 602; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:6385614..6388005 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 78170.80 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.31 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.41 | ||||||||||||||||||||||||||||||||
| Length | 690 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MEWNVNNAFK TYKEMEPKAM MDMTLVPHSD PIDIGLGSSD KSNSVPPKRK KTMTSVYLKY FETAPDSKTR KCKFCGQSYS IATATGNLGR HLTNRHPGYD 101: KAAADVVTSS SVPQTPPAVV KPSQSQSKVP QLDYDHLNWL VLKWLALSSL PPSTVDETWL GNSFKFLKPS IQLWPAEKYK AILDEVFTSM RGDVKTTLEH 201: IQSKVSVTLS FWNSYENIFY MSVTGQWIDE NWSSHRLLLD ICRIPYPSGG SEIYNSLLKV LKTYAIEDRI LCCTHDNSEN AIHACHSLKE YFDGQKVLPF 301: CYIPCAAQTL NDIIDEGLAT IKPIISKVRE FTQELNASTE LSDDFIQLTT AYQEGNWKLP IDASSRWSGN YQMVNILCKA SKSLDSVIRK NEDALENRMM 401: LSSVEKNAVT IVHNYLDLDS FHKTTNDMCT NKDLTVGLAL LFMDNISEMI TTCQKSCHNP DWLRTCAESM AQKARSYNTQ VCNVFTYITA ILDPRIKTEY 501: IPETINLESY IDEARSHFIR NYSSSHFTSS MTSGYRPQEV DEGGGNISFA EEIARRKRRG SMSNNVVDEL TQYLSESIVP MQTDVLDWWK VNSGRYPRLS 601: NMARDFLAVQ ATSAAPEEIF CGKGEEIDKQ KYCMPHDSTQ SVICIRSWIE AGMKLKYKCS EIDYERLMEL AATVAADNSA GGLEKIQQHR |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)