AT1G77620.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, nucleotide binding; INVOLVED IN: DNA repair, cell cycle; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Checkpoint protein Rad24 (InterPro:IPR004582), ATPase, AAA+ type, core (InterPro:IPR003593); BEST Arabidopsis thaliana protein match is: replication factor C1 (TAIR:AT5G22010.1); Has 1511 Blast hits to 1466 proteins in 328 species: Archae - 281; Bacteria - 0; Metazoa - 363; Fungi - 421; Plants - 133; Viruses - 9; Other Eukaryotes - 304 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:29167934..29172867 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 128665.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.70 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.65 | ||||||||||||||||||||||||||||||||||||
| Length | 1151 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MDQTPRRNVR RKLVQSSLLP HKPEDVIDSN GDPMCDEGGE VGDGRSQGKK TRKQKERTPK NGATKKVAKG KSPRKTTPKK CATKNGIVAA GDQMIAANVS 0101: PPVPNLRLEA KLRAEENSRM SAGKQIHPFF STWKGGKRNQ EAVAAENGTC LGRGRDKIVT IGPIHVFDKF QDDYPTTLDW KNWTFYEQTS TTESPDQQIK 0201: FNSLEPRPKE FDLNELPSLS HPDVCVIDDE EPEQCTSQSE GIAEASSVVL IEDQEEKRGC LGFLDGAESD CEVHEAINLS DDAGGEANIS HEMQHLSCRE 0301: SNDSSGQPCN RLWVDKYQPR SASEVCGNTE SVKVMNEWLR QWYERGFQPN KDFLSSDEDK SQDADYNCSE SDSDSEKSGA EDSQKNVLLI VGPAGSGKSA 0401: AIHACAKEQG FKILESNTSE CRSGTVVRQK FGEALKSYSL SRSLDPLFNS CTDGNGVEDV VEVMPVLHIQ NDGANLKPLI LFEDVDICFA EDRGLVSAIQ 0501: QIAVKAKGPV VLTANDKNHG LPDNLERIEI YFSLPSKEEL FNHLSLVCAA EEVKVNHGSL EEMTTFCGGD IRKAIMQLQF WFQSKPKRAR KVKNTGNQDL 0601: FDHEAGHLLL PKIIARDFPS QLSQLVENEI AKVLSMEEER NNTVEVFVEE VENEKMLNRL WRRGTGKNSI QAKKAAMFRQ NTTFEDYDEL EDVLRIPCEL 0701: SNTSYQPLSF SQPNRRRKLN VVMSSDSEDE PLTDIRVSIS QHQKDDRLIF QEDGTLSSYW PDMQKETNPL ADPSRAEILE AACYQYETSK FSYINEVSQS 0801: VEISCVPESS YVPETLMDGE AELSPRAVSC GHFDGRVEVS MNEDVVQTPP SKEIYIDRFQ IFDCLKNTSE IIAESSDATV MEDCFKEYVG AAQKMQQVSD 0901: ECSRMDFGKT YKTAEKPKLD TSRSAVQESW EKICSNLADF KPYLDSEPVE APQVLDLTHQ ITNLISEADL THSRCLNLGA LEPMMNTSGD LDTSGLSQML 1001: EEMTSTVSQQ EFCFLTNQIT TTGSVPTSSA TMVPERGLTV DEARQDYTSS NGSCLDMKPD ILEDLLKCRR MTRLSGVLES VVPLRSLKGR AFHEYASFIG 1101: QISRADPSNL SGALEKGRRR RPREARHYLS MELSSEDIAL LGQHSTYNRN E |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)