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AT2G31650.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : homologue of trithorax
Curator
Summary (TAIR10)
Encodes a homolog of trithorax, a histone-lysine N-methyltransferase. Involved in trimethylating histone H3-lysine 4. Involved in the formation, placement, and identity of flower organs. Role in regulation of homeotic genes. Functions as a receptor of phosphatidylinositol 5-phosphate. Localizes to cytoplasm, plasma membrane and nuclei, shifting to nuclei in the presence of PI5P.
Computational
Description (TAIR10)
homologue of trithorax (ATX1); CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), FY-rich, C-terminal (InterPro:IPR003889), Post-SET domain (InterPro:IPR003616), FY-rich, N-terminal (InterPro:IPR003888), Protein kinase C-like, phorbol ester/diacylglycerol binding (InterPro:IPR002219), Lamin-B receptor of TUDOR domain (InterPro:IPR019023), FY-rich, C-terminal subgroup (InterPro:IPR018516), Zinc finger, FYVE/PHD-type (InterPro:IPR011011), PWWP (InterPro:IPR000313), FY-rich, N-terminal subgroup (InterPro:IPR018518), Zinc finger, PHD-finger (InterPro:IPR019787); BEST Arabidopsis thaliana protein match is: trithorax-like protein 2 (TAIR:AT1G05830.2); Has 7192 Blast hits to 6948 proteins in 474 species: Archae - 2; Bacteria - 393; Metazoa - 3480; Fungi - 840; Plants - 1251; Viruses - 0; Other Eukaryotes - 1226 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G31650-MONOMERBioGrid:3068EC:2.1.1.43eggNOG:COG2940
eggNOG:COG5141eggNOG:KOG1080EMBL:AC007071EMBL:AF329273
EMBL:BT002941EMBL:CP002685EnsemblPlants:AT2G31650EnsemblPlants:AT2G31650.1
entrez:817721Gene3D:3.30.40.10GeneID:817721Genevisible:Q9C5X4
GO:GO:0005634GO:GO:0005737GO:GO:0005886GO:GO:0006355
GO:GO:0008270GO:GO:0009909GO:GO:0010093GO:GO:0010314
GO:GO:0018024GO:GO:0035556GO:GO:0044212GO:GO:0051568
hmmpanther:PTHR13793hmmpanther:PTHR13793:SF100HOGENOM:HOG000030783InParanoid:Q9C5X4
InterPro:IPR000313InterPro:IPR001214InterPro:IPR001965InterPro:IPR002219
InterPro:IPR003616InterPro:IPR003888InterPro:IPR003889InterPro:IPR011011
InterPro:IPR013083InterPro:IPR019023InterPro:IPR019786InterPro:IPR019787
iPTMnet:Q9C5X4KEGG:ath:AT2G31650OMA:AMRKFTSPaxDb:Q9C5X4
Pfam:PF00855Pfam:PF00856Pfam:PF05964Pfam:PF05965
Pfam:PF09465Pfam:PF13831Pfam:PF13832Pfam:Q9C5X4
Pfscan:PS50016Pfscan:PS50081Pfscan:PS50280Pfscan:PS50812
Pfscan:PS50868Pfscan:PS51542Pfscan:PS51543PhylomeDB:Q9C5X4
PIR:D84723PRIDE:Q9C5X4PRO:PR:Q9C5X4PROSITE:PS01359
PROSITE:PS50016PROSITE:PS50081PROSITE:PS50280PROSITE:PS50812
PROSITE:PS50868PROSITE:PS51542PROSITE:PS51543ProteinModelPortal:Q9C5X4
Proteomes:UP000006548RefSeq:NP_850170.1scanprosite:PS01359SMART:SM00249
SMART:SM00293SMART:SM00317SMART:SM00541SMART:SM00542
SMR:Q9C5X4STRING:3702.AT2G31650.1SUPFAM:SSF57903SUPFAM:SSF63748
SUPFAM:SSF82199TAIR:AT2G31650tair10-symbols:ATX1tair10-symbols:SDG27
UniGene:At.14356UniProt:Q9C5X4
Coordinates (TAIR10) chr2:-:13455448..13462181
Molecular Weight (calculated) 119717.00 Da
IEP (calculated) 7.30
GRAVY (calculated) -0.43
Length 1062 amino acids
Sequence (TAIR10)
(BLAST)
0001: MACFSNETQI EIDVHDLVEA PIRYDSIESI YSIPSSALCC VNAVGSHSLM SKKVKAQKLP MIEQFEIEGS GVSASDDCCR SDDYKLRIQR PEIVRVYYRR
0101: RKRPLRECLL DQAVAVKTES VELDEIDCFE EKKRRKIGNC ELVKSGMESI GLRRCKENNA FSGNKQNGSS RRKGSSSKNQ DKATLASRSA KKWVRLSYDG
0201: VDPTSFIGLQ CKVFWPLDAL WYEGSIVGYS AERKRYTVKY RDGCDEDIVF DREMIKFLVS REEMELLHLK FCTSNVTVDG RDYDEMVVLA ATLDECQDFE
0301: PGDIVWAKLA GHAMWPAVIV DESIIGERKG LNNKVSGGGS LLVQFFGTHD FARIKVKQAI SFIKGLLSPS HLKCKQPRFE EGMQEAKMYL KAHRLPERMS
0401: QLQKGADSVD SDMANSTEEG NSGGDLLNDG EVWLRPTEHV DFRHIIGDLL IINLGKVVTD SQFFKDENHI WPEGYTAMRK FTSLTDHSAS ALYKMEVLRD
0501: AETKTHPLFI VTADSGEQFK GPTPSACWNK IYNRIKKVQN SDSPNILGEE LNGSGTDMFG LSNPEVIKLV QDLSKSRPSS HVSMCKNSLG RHQNQPTGYR
0601: PVRVDWKDLD KCNVCHMDEE YENNLFLQCD KCRMMVHAKC YGELEPCDGA LWLCNLCRPG APDMPPRCCL CPVVGGAMKP TTDGRWAHLA CAIWIPETCL
0701: SDVKKMEPID GVNKVSKDRW KLMCTICGVS YGACIQCSNN SCRVAYHPLC ARAAGLCVEL ENDMSVEGEE ADQCIRMLSF CKRHRQTSTA CLGSEDRIKS
0801: ATHKTSEYLP PPNPSGCART EPYNCFGRRG RKEPEALAAA SSKRLFVENQ PYVIGGYSRL EFSTYKSIHG SKVSQMNTPS NILSMAEKYR YMRETYRKRL
0901: AFGKSGIHGF GIFAKLPHRA GDMMIEYTGE LVRPSIADKR EQLIYNSMVG AGTYMFRIDD ERVIDATRTG SIAHLINHSC VPNCYSRVIT VNGDEHIIIF
1001: AKRHIPKWEE LTYDYRFFSI GERLSCSCGF PGCRGVVNDT EAEEQHAKIC VPRCDLIDWT AE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)