AT4G13970.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.907 What is SUBAcon? |
|||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : zinc ion binding | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||
| Computational Description (TAIR10) |
zinc ion binding; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, SWIM-type (InterPro:IPR007527); BEST Arabidopsis thaliana protein match is: SWIM zinc finger family protein (TAIR:AT1G60560.1); Has 80 Blast hits to 80 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 25; Fungi - 2; Plants - 53; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||
| Coordinates (TAIR10) | chr4:-:8070696..8074134 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 88353.50 Da | ||||||||||||||||||||||||
| IEP (calculated) | 7.35 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.46 | ||||||||||||||||||||||||
| Length | 778 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MARWDQIFSL PVQNPTLPEF SSTDLVWSKV EGYRDNIDRL ALIPYTRVDD FVRGECSNKD CPTSFHVEAR RRKAKGKKYK PKVDGILEYI LYWCSFGPDD 101: NRKGGTVRPS RSTYVPKKNN AGRPNSKRGC RCHFIVKRLI AEPTVALVIY NNDKHVDEKG FPCHGPQDKK AAGTRAMFAP YISEDLRLRV SSLLYVGVSV 201: ETIMQRHNES VEKQGGPSNR DDLLTHRYVR RLERSIRRST YELDEDDDVS ISMWVESHQS HVFFFEGFSD TDPFSLGIQT EWQLQQMIRF GNCRLLASDS 301: RFGTNTLKYP IHSLVVFDSE NKAIPVAWII APRFSSGDAY RWMRALCNRV HAKDPSWKVA GFIVDDPFAD IIAIRDVFQC PVLFSFWRLR HAWHKNIIKR 401: CRETKTRVEI SRHLGQAVDK ISRRQGTATL FDSFVEDFVG SPEFVEYFRS VWSPRIGAWT SALQSLPLAS QETCAAMELY HYQLKCRLLN ERDSEAYQRA 501: DWLVDKLGTK VHSYFWLDEY SGKDNFARYW KEEWVSGLTS FRKALSIPDS DVVISGMSAK ITDECDGNEI HVVWNPGSQF GVCSCSWAEK GYICKHMIKL 601: TQLCLGNRAA RQSASLLQYY QTLIDLLRCP PHDSLFRDYA VSLAVSVEKQ INALGYLQKS DANEGNLQKE IAFSEPSSGK SLDESDLLDK HEGHGEVATD 701: LDGGLSKMPM SCLRVCSGNA EDIISGSEME IGLSPGSTKA AAEDVTSTVQ NGTDSANENC ERGAKRLKIW APENGVYE |
||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)