AT4G36850.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.949 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : PQ-loop repeat family protein / transmembrane family protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
PQ-loop repeat family protein / transmembrane family protein; CONTAINS InterPro DOMAIN/s: Cystinosin/ERS1p repeat (InterPro:IPR006603); BEST Arabidopsis thaliana protein match is: PQ-loop repeat family protein / transmembrane family protein (TAIR:AT2G41050.1); Has 883 Blast hits to 635 proteins in 156 species: Archae - 0; Bacteria - 0; Metazoa - 204; Fungi - 499; Plants - 92; Viruses - 0; Other Eukaryotes - 88 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:17353415..17355822 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 43826.00 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 8.17 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.04 | ||||||||||||||||||||||||||||
| Length | 392 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVSLGYCLKE KKTCVRWVEI YFDDCLCNLN DDVSFALGIA SLLCWGVAEI PQVITNFRTK SSNGVSLSFL LAWVAGDIFN LVGCLLEPAT LPTQFYTALL 101: YTVSTVVLVI QTIYYDYIYK LCRHRRTKIC QKDEEDEEKR PLKPPKTMGS AISIPGGSYK DSSRREFYYT SARSLAGSGT PPLRTSYFRV AKSGPSALAI 201: DNDGSSSDED ETMSTCPVIT AKTITKPRPI PRQAGFGTFL AASASLPLQA KSLAEKYAHA SSRRLLNERI VEHSALGQWL GWLMAAIYMG GRIPQIWLNI 301: KRGSVEGLNP LMFIFALVAN ATYVGSILVR TTEWDNIKPN LPWLLDAIVC VVLDLFIILQ YIYYKYCRIK SLESREEDAY GDYVEASKTF VS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)