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AT4G36240.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : GATA transcription factor 7
Curator
Summary (TAIR10)
Encodes a member of the GATA factor family of zinc finger transcription factors.
Computational
Description (TAIR10)
GATA transcription factor 7 (GATA7); CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Transcription factor, GATA, plant (InterPro:IPR016679), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: GATA transcription factor 5 (TAIR:AT5G66320.2); Has 1362 Blast hits to 1315 proteins in 146 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 522; Plants - 778; Viruses - 0; Other Eukaryotes - 59 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5641eggNOG:KOG1601EMBL:AL022141EMBL:AL161589
EMBL:AY072434EMBL:AY114720EMBL:CP002687EnsemblPlants:AT4G36240
EnsemblPlants:AT4G36240.1entrez:829781Gene3D:3.30.50.10GeneID:829781
GO:GO:0000977GO:GO:0001085GO:GO:0001228GO:GO:0003682
GO:GO:0003700GO:GO:0005634GO:GO:0005667GO:GO:0006366
GO:GO:0007623GO:GO:0008270GO:GO:0009416GO:GO:0030154
GO:GO:0045944Gramene:AT4G36240.1hmmpanther:PTHR10071hmmpanther:PTHR10071:SF183
HOGENOM:HOG000238267InParanoid:O65515InterPro:IPR000679InterPro:IPR013088
InterPro:IPR016679KEGG:ath:AT4G36240OMA:RCCSHCGPaxDb:O65515
Pfam:O65515Pfam:PF00320Pfscan:PS50114PhylomeDB:O65515
PIR:T04593PIRSF:PIRSF016992PRIDE:O65515PRO:PR:O65515
PROSITE:PS00344PROSITE:PS50114ProteinModelPortal:O65515Proteomes:UP000006548
RefSeq:NP_195347.1scanprosite:PS00344SMART:SM00401SMR:O65515
STRING:3702.AT4G36240.1SUPFAM:SSF57716TAIR:AT4G36240tair10-symbols:GATA7
UniGene:At.31340UniProt:O65515
Coordinates (TAIR10) chr4:-:17147376..17148211
Molecular Weight (calculated) 26800.70 Da
IEP (calculated) 8.40
GRAVY (calculated) -0.65
Length 238 amino acids
Sequence (TAIR10)
(BLAST)
001: MECVEAFLGD FSVDDLLDLS NADTSLESSS SQRKEDEQER EKFKSFSDQS TRLSPPEDLL SFPGDAPVGD LEDLEWLSNF VEDSFSESYI SSDFPVNPVA
101: SVEVRRQCVP VKPRSKRRRT NGRIWSMESP SPLLSTAVAR RKKRGRQKVD ASYGGVVQQQ QLRRCCSHCG VQKTPQWRMG PLGAKTLCNA CGVRFKSGRL
201: LPEYRPACSP TFTNEIHSNS HRKVLELRLM KVADPARV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)