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AT1G45010.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plasma membrane 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, integral to membrane; CONTAINS InterPro DOMAIN/s: TRAM/LAG1/CLN8 homology domain (InterPro:IPR006634); BEST Arabidopsis thaliana protein match is: TRAM, LAG1 and CLN8 (TLC) lipid-sensing domain containing protein (TAIR:AT1G35180.1); Has 219 Blast hits to 219 proteins in 66 species: Archae - 0; Bacteria - 0; Metazoa - 76; Fungi - 6; Plants - 93; Viruses - 3; Other Eukaryotes - 41 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z5I9eggNOG:KOG4474EMBL:AK119025EMBL:AY063919
EMBL:AY117333EMBL:CP002684EnsemblPlants:AT1G45010EnsemblPlants:AT1G45010.1
entrez:841066GeneID:841066GO:GO:0016021Gramene:AT1G45010.1
hmmpanther:PTHR31898HOGENOM:HOG000265034InterPro:IPR006634KEGG:ath:AT1G45010
OMA:HHTLSICPfam:PF03798Pfscan:PS50922PhylomeDB:Q8VZR3
PROSITE:PS50922Proteomes:UP000006548RefSeq:NP_175121.2SMART:SM00724
TAIR:AT1G45010TMHMM:TMhelixUniGene:At.27146UniProt:Q8VZR3
Coordinates (TAIR10) chr1:-:17013513..17015403
Molecular Weight (calculated) 25919.00 Da
IEP (calculated) 9.19
GRAVY (calculated) 0.52
Length 231 amino acids
Sequence (TAIR10)
(BLAST)
001: MEEEQVRAIK IIVFGVISWG VAFILTRRIF SSYSFSFSNR LLSTAHATIA VTLATLSVQD LSCPVCPLAS KPSHKQMDVM AFSLSYMIYD LICCHFDQVF
101: SIDNAVHHFV SILGFIAGLA YQKSGSEIVA TLWVAEISSP FFHLREILKE IGYKDTKLNL AADVCFATIF TLARIVCGPF LVYVSLSADN PIFIKAMGSG
201: LQLVSIFWFY KIFGMMRYKL FKKPKSNKKS T
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)