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AT5G51870.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : AGAMOUS-like 71
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
AGAMOUS-like 71 (AGL71); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: embryo, leaf whorl, flower; EXPRESSED DURING: petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: K-box region and MADS-box transcription factor family protein (TAIR:AT5G51860.2); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Protein Annotations
EMBL:AB025623EMBL:AY141220EMBL:CP002688EnsemblPlants:AT5G51870
EnsemblPlants:AT5G51870.1entrez:835262ExpressionAtlas:Q9LT93GeneID:835262
GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351
GO:GO:0009908GO:GO:0030154hmmpanther:PTHR11945hmmpanther:PTHR11945:SF204
HOGENOM:HOG000155301IntAct:Q9LT93InterPro:IPR002100InterPro:IPR002487
ncoils:CoilPfam:PF00319Pfam:PF01486Pfscan:PS50066
Pfscan:PS51297PhylomeDB:Q9LT93PRINTS:PR00404PROSITE:PS50066
PROSITE:PS51297Proteomes:UP000006548RefSeq:NP_200000.3SMART:SM00432
SMR:Q9LT93SUPFAM:SSF55455TAIR:AT5G51870tair10-symbols:AGL71
UniGene:At.29655UniProt:Q9LT93
Coordinates (TAIR10) chr5:-:21085635..21087923
Molecular Weight (calculated) 24080.20 Da
IEP (calculated) 10.00
GRAVY (calculated) -0.64
Length 207 amino acids
Sequence (TAIR10)
(BLAST)
001: MVRGKIEIKK IENVTSRQVT FSKRRSGLFK KAHELSVLCD AQVAAIVFSQ SGRLHEYSSS QMEKIIDRYG KFSNAFYVAE RPQVERYLQE LKMEIDRMVK
101: KIDLLEVHHR KLLGQGLDSC SVTELQEIDT QIEKSLRIVR SRKAELYADQ LKKLKEKERE LLNERKRLLE EVNMHHSSKG NTEGGHRTKH SSEVETDLFI
201: GLPVTRL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)