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AT1G08290.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : WIP domain protein 3
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
WIP domain protein 3 (WIP3); CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: WIP domain protein 5 (TAIR:AT1G51220.1); Has 40394 Blast hits to 17903 proteins in 213 species: Archae - 0; Bacteria - 0; Metazoa - 38493; Fungi - 119; Plants - 685; Viruses - 0; Other Eukaryotes - 1097 (source: NCBI BLink).
Protein Annotations
BioGrid:22590eggNOG:COG5048eggNOG:KOG1721EMBL:AC011438
EMBL:AF254448EMBL:AK118851EMBL:AY090918EMBL:CP002684
EnsemblPlants:AT1G08290EnsemblPlants:AT1G08290.1entrez:837349Gene3D:3.30.160.60
GeneID:837349GO:GO:0003676GO:GO:0003700GO:GO:0005634
GO:GO:0006351GO:GO:0006355GO:GO:0046872Gramene:AT1G08290.1
hmmpanther:PTHR10593hmmpanther:PTHR10593:SF41HOGENOM:HOG000241465InParanoid:Q9SGD1
InterPro:IPR007087InterPro:IPR013087InterPro:IPR015880KEGG:ath:AT1G08290
OMA:FEEDTECPaxDb:Q9SGD1Pfam:Q9SGD1Pfscan:PS50157
PhylomeDB:Q9SGD1PRIDE:Q9SGD1PRO:PR:Q9SGD1PROSITE:PS00028
PROSITE:PS50157ProteinModelPortal:Q9SGD1Proteomes:UP000006548RefSeq:NP_172306.1
scanprosite:PS00028SMART:SM00355SMR:Q9SGD1STRING:3702.AT1G08290.1
SUPFAM:SSF57667TAIR:AT1G08290tair10-symbols:WIP3UniGene:At.28309
UniProt:Q9SGD1
Coordinates (TAIR10) chr1:-:2610680..2613180
Molecular Weight (calculated) 38598.00 Da
IEP (calculated) 8.95
GRAVY (calculated) -0.77
Length 337 amino acids
Sequence (TAIR10)
(BLAST)
001: MNSYETKGLS FESPSFIEWL KPQSSTTSSK SVLYRGKTRD AISRSNHHQS QMNMLERSLF LYQPQEPLNT SIQCLPLLNK LMENNSQASD IKEENKDDVV
101: TLQIGFPKYH RGSSEDGSDI TFDHQKKPIK REIIEDGVVM MKKRRKMKFD EEIIDSDVEV CGKRFWIPSP AQIHVGPMQF ACSICSKTFN RYNNMQMHMW
201: GHGSEFRKGA DSLKGTIQPA AILRLPCYCC AEGCKNNINH PRSKPLKDFR TLQTHYKRKH GSKPFSCGKC GKALAVKGDW RTHEKNCGKL WYCTCGSDFK
301: HKRSLKDHIR SFGSGHSPHP SLLFDGFEED TECVTTE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)