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AT1G25310.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : basic helix-loop-helix (bHLH) DNA-binding family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
maternal effect embryo arrest 8 (MEE8); CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092); Has 109 Blast hits to 109 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 109; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:24352EMBL:AC079374EMBL:CP002684EnsemblPlants:AT1G25310
EnsemblPlants:AT1G25310.1entrez:839115Gene3D:4.10.280.10GeneID:839115
GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351
GO:GO:0009793Gramene:AT1G25310.1InterPro:IPR011598KEGG:ath:AT1G25310
PaxDb:Q9FRI0Pfam:Q9FRI0Pfscan:PS50888PRO:PR:Q9FRI0
PROSITE:PS50888ProteinModelPortal:Q9FRI0Proteomes:UP000006548RefSeq:NP_173902.1
SMR:Q9FRI0STRING:3702.AT1G25310.1SUPFAM:SSF47459TAIR:AT1G25310
tair10-symbols:MEE8UniGene:At.51765UniProt:Q9FRI0
Coordinates (TAIR10) chr1:-:8874124..8874834
Molecular Weight (calculated) 17021.30 Da
IEP (calculated) 9.66
GRAVY (calculated) -0.90
Length 145 amino acids
Sequence (TAIR10)
(BLAST)
001: MNKDEVFLRQ WFEILYSLTN PEANSDLRRI NNEKGVEKVG QKRSAESRRE GKKKRVKTQC VIKSSDKSDH DTLLKKKRRE RIRRQLETLK EITPNCPQSD
101: INAILDCVIE YTNNLRLAHY KGSQGICDDW RLFTEAGAVL YYIDT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)