AT1G25310.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : basic helix-loop-helix (bHLH) DNA-binding family protein | ||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
maternal effect embryo arrest 8 (MEE8); CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092); Has 109 Blast hits to 109 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 109; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr1:-:8874124..8874834 | ||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 17021.30 Da | ||||||||||||||||||||||||||||||||
IEP (calculated) | 9.66 | ||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.90 | ||||||||||||||||||||||||||||||||
Length | 145 amino acids | ||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MNKDEVFLRQ WFEILYSLTN PEANSDLRRI NNEKGVEKVG QKRSAESRRE GKKKRVKTQC VIKSSDKSDH DTLLKKKRRE RIRRQLETLK EITPNCPQSD 101: INAILDCVIE YTNNLRLAHY KGSQGICDDW RLFTEAGAVL YYIDT |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)