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AT5G67110.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Curator
Summary (TAIR10)
encodes a myc/bHLH transcription factor-like protein. Gene product is involved in fruit dehiscence. Mutant siliques fail to dehisce.
Computational
Description (TAIR10)
ALCATRAZ (ALC); CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: basic helix-loop-helix (bHLH) DNA-binding superfamily protein (TAIR:AT4G36930.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BioGrid:22088eggNOG:ENOG410JSG2eggNOG:ENOG41108UEEMBL:AB020742
EMBL:AF488605EMBL:BT028946EMBL:CP002688EnsemblPlants:AT5G67110
EnsemblPlants:AT5G67110.1entrez:836846Gene3D:4.10.280.10GeneID:836846
Genevisible:Q9FHA2GO:GO:0003677GO:GO:0003700GO:GO:0005634
GO:GO:0006351GO:GO:0010047hmmpanther:PTHR12565hmmpanther:PTHR12565:SF87
HOGENOM:HOG000033902InParanoid:Q9FHA2IntAct:Q9FHA2InterPro:IPR011598
KEGG:ath:AT5G67110OMA:HTRINETPaxDb:Q9FHA2Pfam:PF00010
Pfam:Q9FHA2Pfscan:PS50888PhylomeDB:Q9FHA2PRIDE:Q9FHA2
PRO:PR:Q9FHA2PROSITE:PS50888ProteinModelPortal:Q9FHA2Proteomes:UP000006548
RefSeq:NP_001078810.1RefSeq:NP_001078811.1RefSeq:NP_201512.1SMART:SM00353
SMR:Q9FHA2STRING:3702.AT5G67110.1SUPFAM:SSF47459TAIR:AT5G67110
tair10-symbols:ALCUniGene:At.28825UniProt:Q9FHA2
Coordinates (TAIR10) chr5:-:26785332..26786338
Molecular Weight (calculated) 22964.30 Da
IEP (calculated) 9.74
GRAVY (calculated) -0.60
Length 210 amino acids
Sequence (TAIR10)
(BLAST)
001: MGDSDVGDRL PPPSSSDELS SFLRQILSRT PTAQPSSPPK STNVSSAETF FPSVSGGAVS SVGYGVSETG QDKYAFEHKR SGAKQRNSLK RNIDAQFHNL
101: SEKKRRSKIN EKMKALQKLI PNSNKTDKAS MLDEAIEYLK QLQLQVQTLA VMNGLGLNPM RLPQVPPPTH TRINETLEQD LNLETLLAAP HSLEPAKTSQ
201: GMCFSTATLL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)