AT1G75530.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Forkhead-associated (FHA) domain-containing protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Forkhead-associated (FHA) domain-containing protein ; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: cultured cell; CONTAINS InterPro DOMAIN/s: SMAD/FHA domain (InterPro:IPR008984), Forkhead-associated (FHA) domain (InterPro:IPR000253); BEST Arabidopsis thaliana protein match is: Forkhead-associated (FHA) domain-containing protein (TAIR:AT3G54350.3); Has 370 Blast hits to 247 proteins in 81 species: Archae - 0; Bacteria - 2; Metazoa - 217; Fungi - 16; Plants - 96; Viruses - 0; Other Eukaryotes - 39 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:28359309..28361815 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 63273.80 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.37 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.58 | ||||||||||||||||||||||||||||||||
| Length | 555 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAFQWLPEDD YLLRKSLEDG TSLETLAKGA VRFSRKFTLS ELTERWHCLL YNPKVTSLSS SVGFELQYGA QFVPQSLFDS VPVRTHYYTT RKRRRLELEE 101: SLKVNNNAID EHLNVEEGNL FGECDDDFGF KFEDIESFRN TFPDILLSPH DYQTTIFGNE IDDEDDRMVN QMLNINDDQI HDSYVTDTIT TTTEHVLLQE 201: VFQDPLFQQP NASLNEPASP SQQQVILDQA EIWIPPPPYD PHPEIVNGVI NCVINRESDE IPDNDDINLQ LYNPKARNSV NPSSVRNNMK PPLPPVRRSS 301: LQVKSKDIID SSGFGDCAVT TRASSSSAFS DSFTEKATST VAATTSSTLQ HFPENEICEQ TLSAEMDINV PEENNIEIES DEELPSFSDL EAMILDMDLE 401: PIGQDQYELD ASKYRNEEMA RKIMRLEQSA ESYMNRDIAA HGAFALLYGS SKHYINKPEV LLGRATGEYP VDIDLGRSGS ETRFSRRQAL IKLKQDGSFE 501: IKNLGKFSIW MNDEEINHGE VVILKNNCLI QIREKSFIFE KNEKAVKRYL DGIHK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)