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AT2G40350.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : Integrase-type DNA-binding superfamily protein
Curator
Summary (TAIR10)
encodes a member of the DREB subfamily A-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are eight members in this subfamily including DREB2A AND DREB2B that are involved in response to drought.
Computational
Description (TAIR10)
Integrase-type DNA-binding superfamily protein; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT2G40340.1); Has 4959 Blast hits to 4957 proteins in 222 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 4951; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
Protein Annotations
BioGrid:3966eggNOG:ENOG410JCFTeggNOG:ENOG410YNYNEMBL:AC007020
EMBL:AY560891EMBL:CP002685EnsemblPlants:AT2G40350EnsemblPlants:AT2G40350.1
entrez:818628Gene3D:3.30.730.10GeneID:818628Genevisible:Q9SIZ0
GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351
GO:GO:0010286Gramene:AT2G40350.1hmmpanther:PTHR31241hmmpanther:PTHR31241:SF2
InParanoid:Q9SIZ0InterPro:IPR001471InterPro:IPR016177KEGG:ath:AT2G40350
PaxDb:Q9SIZ0Pfam:PF00847Pfam:Q9SIZ0Pfscan:PS51032
PhylomeDB:Q9SIZ0PIR:D84828PRIDE:Q9SIZ0PRINTS:PR00367
PROSITE:PS51032ProteinModelPortal:Q9SIZ0Proteomes:UP000006548RefSeq:NP_181566.2
SMART:SM00380SMR:Q9SIZ0STRING:3702.AT2G40350.1SUPFAM:SSF54171
TAIR:AT2G40350UniGene:At.50673UniProt:Q9SIZ0
Coordinates (TAIR10) chr2:-:16851595..16852068
Molecular Weight (calculated) 17792.60 Da
IEP (calculated) 10.60
GRAVY (calculated) -0.63
Length 157 amino acids
Sequence (TAIR10)
(BLAST)
001: MPRKRKSRGT RDVAEILRKW REYNEQTEAD SCIDGGGSKP IRKAPPKRSR KGCMKGKGGP ENGICDYTGV RQRTWGKWVA EIREPGRGAK LWLGTFSSSY
101: EAALAYDEAS KAIYGQSARL NLPLLPLCQA RLLHFLMNLK FVHVRIQMQD LVLVRSD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)