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AT3G61120.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : AGAMOUS-like 13
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
AGAMOUS-like 13 (AGL13); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 6 (TAIR:AT2G45650.1); Has 7229 Blast hits to 7228 proteins in 913 species: Archae - 0; Bacteria - 0; Metazoa - 632; Fungi - 307; Plants - 6214; Viruses - 0; Other Eukaryotes - 76 (source: NCBI BLink).
Protein Annotations
BioGrid:10598eggNOG:COG5068eggNOG:KOG0014EMBL:AL137898
EMBL:CP002686EMBL:U20183EnsemblPlants:AT3G61120EnsemblPlants:AT3G61120.1
entrez:825284GeneID:825284Genevisible:Q38837GO:GO:0003677
GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0009555
GO:GO:0010468GO:GO:0048481Gramene:AT3G61120.1hmmpanther:PTHR11945
hmmpanther:PTHR11945:SF146HOGENOM:HOG000155301InParanoid:Q38837IntAct:Q38837
InterPro:IPR002100InterPro:IPR002487KEGG:ath:AT3G61120ncoils:Coil
OMA:LETEDHDPaxDb:Q38837Pfam:PF00319Pfam:PF01486
Pfam:Q38837Pfscan:PS50066Pfscan:PS51297PhylomeDB:Q38837
PIR:T47904PRIDE:Q38837PRINTS:PR00404PRO:PR:Q38837
PROSITE:PS00350PROSITE:PS50066PROSITE:PS51297ProteinModelPortal:Q38837
Proteomes:UP000006548RefSeq:NP_191671.1scanprosite:PS00350SMART:SM00432
SMR:Q38837STRING:3702.AT3G61120.1SUPFAM:SSF55455TAIR:AT3G61120
tair10-symbols:AGL13UniGene:At.968UniProt:Q38837
Coordinates (TAIR10) chr3:-:22618414..22620466
Molecular Weight (calculated) 27969.30 Da
IEP (calculated) 6.92
GRAVY (calculated) -0.68
Length 244 amino acids
Sequence (TAIR10)
(BLAST)
001: MGRGKVEVKR IENKITRQVT FSKRKSGLLK KAYELSVLCD AEVSLIIFST GGKLYEFSNV GVGRTIERYY RCKDNLLDND TLEDTQGLRQ EVTKLKCKYE
101: SLLRTHRNLV GEDLEGMSIK ELQTLERQLE GALSATRKQK TQVMMEQMEE LRRKERELGD INNKLKLETE DHDFKGFQDL LLNPVLTAGC STDFSLQSTH
201: QNYISDCNLG YFLQIGFQQH YEQGEGSSVT KSNARSDAET NFVQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)