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AT3G01790.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31871212 (2020): mitochondrion
  • PMID:31818904 (2020): mitochondrion
  • PMID:31520498 (2020): mitochondrion
  • PMID:27943495 (2017): mitochondrion
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:23750852 (2013): mitochondrion
  • PMID:21841088 (2011): mitochondrion
FP Images

Arabidopsis cell culture (mitochondrial marker)

At3g01790-GFP
(full-length)
mitochondrial marker-RFPoverlay

Images by Sandra Tanz

Arabidopsis cell culture (plastidal marker)

At3g01790-GFP
(full-length)
plastidal marker-RFPoverlay

Images by Sandra Tanz
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ribosomal protein L13 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal protein L13 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: ribosome, intracellular, large ribosomal subunit; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L13, bacterial-type (InterPro:IPR005823), Ribosomal protein L13 (InterPro:IPR005822); BEST Arabidopsis thaliana protein match is: Ribosomal protein L13 family protein (TAIR:AT1G78630.1); Has 7701 Blast hits to 7701 proteins in 2675 species: Archae - 7; Bacteria - 5222; Metazoa - 123; Fungi - 136; Plants - 125; Viruses - 0; Other Eukaryotes - 2088 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0102eggNOG:KOG3203EMBL:AK227266EMBL:BT010192
EMBL:CP002686EnsemblPlants:AT3G01790EnsemblPlants:AT3G01790.1EnsemblPlants:AT3G01790.2
entrez:821078Gene3D:3.90.1180.10GeneID:821078GO:GO:0003735
GO:GO:0005840GO:GO:0006412Gramene:AT3G01790.1Gramene:AT3G01790.2
HAMAP:MF_01366hmmpanther:PTHR11545HOGENOM:HOG000225288InterPro:IPR005822
InterPro:IPR005823InterPro:IPR023564KEGG:ath:AT3G01790KO:K02871
ncoils:CoilOMA:IFTNDEHPANTHER:PTHR11545Pfam:PF00572
PhylomeDB:Q7XA68PIRSF:PIRSF002181PRO:PR:Q7XA68Proteomes:UP000006548
RefSeq:NP_186828.2RefSeq:NP_850494.1SMR:Q7XA68STRING:3702.AT3G01790.1
SUPFAM:SSF52161TAIR:AT3G01790TIGRfam:TIGR01066TIGRFAMs:TIGR01066
UniGene:At.41230UniProt:Q7XA68
Coordinates (TAIR10) chr3:-:283880..285583
Molecular Weight (calculated) 23381.50 Da
IEP (calculated) 11.05
GRAVY (calculated) -0.77
Length 205 amino acids
Sequence (TAIR10)
(BLAST)
001: MATQAAAAAS FKGNLKKAVA GIKRINLDGL RWRVFDARGQ VLGRLASQIS TVLQAKDKPT YCPNRDDGDI CIVLNAKEIG FTGRKLTDKF YRWHTGYIGH
101: LKERSLKDQM AKDPTEVIRK AVWRMLPSNN LRDDRDRKLR IFEGGEHPFG DKPLEPFVMP PRRVREMRPR ARRAMIRAQK KAEQAENEGT EVKKGKKRTL
201: SEVPA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)