AT5G28530.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.752 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : FAR1-related sequence 10 | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
FAR1-related sequence 10 (FRS10); FUNCTIONS IN: zinc ion binding; INVOLVED IN: response to red or far red light; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: MULE transposase, conserved domain (InterPro:IPR018289), Transcription factor, FAR1-related (InterPro:IPR004330), Zinc finger, PMZ-type (InterPro:IPR006564), Zinc finger, SWIM-type (InterPro:IPR007527); BEST Arabidopsis thaliana protein match is: FAR1-related sequence 11 (TAIR:AT1G10240.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:10525078..10527300 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 78529.60 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.05 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.32 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 685 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MALKPLNNIW IRRQQCPCGD WKCYIRLEED ESTITKSEIE STPTPTSQYD TVFTPYVGQI FTTDDEAFEY YSTFARKSGF SIRKARSTES QNLGVYRRDF 101: VCYRSGFNQP RKKANVEHPR ERKSVRCGCD GKLYLTKEVV DGVSHWYVSQ FSNVHNHELL EDDQVRLLPA YRKIQQSDQE RILLLSKAGF PVNRIVKLLE 201: LEKGVVSGQL PFIEKDVRNF VRACKKSVQE NDAFMTEKRE SDTLELLECC KGLAERDMDF VYDCTSDENQ KVENIAWAYG DSVRGYSLFG DVVVFDTSYR 301: SVPYGLLLGV FFGIDNNGKA MLLGCVLLQD ESCRSFTWAL QTFVRFMRGR HPQTILTDID TGLKDAIGRE MPNTNHVVFM SHIVSKLASW FSQTLGSHYE 401: EFRAGFDMLC RAGNVDEFEQ QWDLLVTRFG LVPDRHAALL YSCRASWLPC CIREHFVAQT MTSEFNLSID SFLKRVVDGA TCMQLLLEES ALQVSAAASL 501: AKQILPRFTY PSLKTCMPME DHARGILTPY AFSVLQNEMV LSVQYAVAEM ANGPFIVHHY KKMEGECCVI WNPENEEIQC SCKEFEHSGI LCRHTLRVLT 601: VKNCFHIPEQ YFLLRWRQES PHVATENQNG QGIGDDSAQT FHSLTETLLT ESMISKDRLD YANQELSLLI DRVRNTAPAN CLYQP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)