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AT1G33350.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pentatricopeptide repeat (PPR) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pentatricopeptide repeat (PPR) superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 6 plant structures; EXPRESSED DURING: C globular stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Tetratricopeptide-like helical (InterPro:IPR011990); BEST Arabidopsis thaliana protein match is: mitochondrial editing factor 21 (TAIR:AT2G20540.1); Has 34946 Blast hits to 13536 proteins in 257 species: Archae - 4; Bacteria - 29; Metazoa - 79; Fungi - 56; Plants - 34238; Viruses - 0; Other Eukaryotes - 540 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AC027035EMBL:AC051630
EMBL:AK118395EMBL:AK222040EMBL:BT005240EMBL:CP002684
EnsemblPlants:AT1G33350EnsemblPlants:AT1G33350.1entrez:840229Gene3D:1.25.40.10
GeneID:840229Genevisible:Q9C501Gramene:AT1G33350.1hmmpanther:PTHR24015
hmmpanther:PTHR24015:SF7HOGENOM:HOG000237569InParanoid:Q9C501InterPro:IPR002885
InterPro:IPR011990KEGG:ath:AT1G33350OMA:NANYVVMPaxDb:Q9C501
Pfam:PF01535Pfam:PF13041Pfam:Q9C501Pfscan:PS51375
PhylomeDB:Q9C501PIR:C86457PRIDE:Q9C501PRO:PR:Q9C501
PROSITE:PS51375ProteinModelPortal:Q9C501Proteomes:UP000006548RefSeq:NP_174603.1
SMR:Q9C501STRING:3702.AT1G33350.1SUPFAM:SSF48452TAIR:AT1G33350
TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.24521UniProt:Q9C501
Coordinates (TAIR10) chr1:-:12090071..12091687
Molecular Weight (calculated) 60477.10 Da
IEP (calculated) 8.10
GRAVY (calculated) 0.04
Length 538 amino acids
Sequence (TAIR10)
(BLAST)
001: MGTRVTQFSY LHAPSSHMAE QLLNQFISAV ISKSRHLNHL KQVQSFMIVS GLSHSHFLCF KLLRFCTLRL CNLSYARFIF DRFSFPNTHL YAAVLTAYSS
101: SLPLHASSAF SFFRLMVNRS VPRPNHFIYP LVLKSTPYLS SAFSTPLVHT HLFKSGFHLY VVVQTALLHS YASSVSHITL ARQLFDEMSE RNVVSWTAML
201: SGYARSGDIS NAVALFEDMP ERDVPSWNAI LAACTQNGLF LEAVSLFRRM INEPSIRPNE VTVVCVLSAC AQTGTLQLAK GIHAFAYRRD LSSDVFVSNS
301: LVDLYGKCGN LEEASSVFKM ASKKSLTAWN SMINCFALHG RSEEAIAVFE EMMKLNINDI KPDHITFIGL LNACTHGGLV SKGRGYFDLM TNRFGIEPRI
401: EHYGCLIDLL GRAGRFDEAL EVMSTMKMKA DEAIWGSLLN ACKIHGHLDL AEVAVKNLVA LNPNNGGYVA MMANLYGEMG NWEEARRARK MIKHQNAYKP
501: PGWSRIEIDN EVHQFYSLDK SHPETEEIYM ILDSLISF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)