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AT5G05130.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : DNA/RNA helicase protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
DNA/RNA helicase protein; FUNCTIONS IN: in 6 functions; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), HIP116, Rad5p N-terminal (InterPro:IPR014905), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: DNA/RNA helicase protein (TAIR:AT5G22750.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-1539-MONOMERBioGrid:15674EC:3.6.4.-eggNOG:ENOG410INU2
eggNOG:ENOG410XQ1SEMBL:AB005245EMBL:AY093185EMBL:AY093211
EMBL:BT008802EMBL:CP002688EnsemblPlants:AT5G05130EnsemblPlants:AT5G05130.1
entrez:830395Gene3D:3.30.40.10Gene3D:3.40.50.300GeneID:830395
Genevisible:Q9FF61GO:GO:0003676GO:GO:0004386GO:GO:0005524
GO:GO:0005634GO:GO:0006351GO:GO:0008270GO:GO:0016568
Gramene:AT5G05130.1hmmpanther:PTHR10799HOGENOM:HOG000172619InParanoid:Q9FF61
InterPro:IPR000330InterPro:IPR001650InterPro:IPR001841InterPro:IPR013083
InterPro:IPR014001InterPro:IPR014905InterPro:IPR017907InterPro:IPR027417
KEGG:ath:AT5G05130KO:K15711ncoils:CoilPaxDb:Q9FF61
Pfam:PF00176Pfam:PF00271Pfam:PF08797Pfam:PF13920
Pfam:Q9FF61Pfscan:PS50089Pfscan:PS51192Pfscan:PS51194
PhylomeDB:Q9FF61PRIDE:Q9FF61PRO:PR:Q9FF61PROSITE:PS00518
PROSITE:PS50089PROSITE:PS51192PROSITE:PS51194ProteinModelPortal:Q9FF61
Proteomes:UP000006548RefSeq:NP_196132.2scanprosite:PS00518SMART:SM00184
SMART:SM00487SMART:SM00490SMART:SM00910SMR:Q9FF61
STRING:3702.AT5G05130.1SUPFAM:SSF52540SUPFAM:SSF57850TAIR:AT5G05130
UniGene:At.33030UniProt:Q9FF61
Coordinates (TAIR10) chr5:+:1512173..1514918
Molecular Weight (calculated) 96351.30 Da
IEP (calculated) 8.49
GRAVY (calculated) -0.32
Length 862 amino acids
Sequence (TAIR10)
(BLAST)
001: MAQFLRRFSS SPMANEDEFQ SPVEPSQQQS QDCVSESYLI GFVIANIVGL KYYSGRINGR EMVGLVREPL NVYDNNAIRV LNTRSEQVGH IERTVAAVLA
101: PMIDSHTIVV EGIVPNTRSN SNRYRIPCQI HVFAKLEASS TVKSTISRGG LVLISESDTS FGLSEAVVVK EQMGNGDKRS VDKIFKLVDE NVKLMGKLVA
201: AEPPREVIKS ELFAHQKEGL GWLLHREKSG ELPPFWEEKD GEFLNTLTNY RSDKRPDPLR GGVFADDMGL GKTLTLLSLI AFDRYGNAST STPTEEPLDG
301: EGDKIEKKGK KRGRGKSSES VTRKKLKTDD VVGMNVSQKT TLIVCPPSVI SAWITQLEEH TVPGILKVYM YHGGERTDDV NELMKYDIVL TTYGTLAVEE
401: SWEDSPVKKM EWLRIILDEA HTIKNANAQQ SRVVCKLKAS RRWAVTGTPI QNGSFDLYSL MAFLRFEPFS IKSYWQSLIQ RPLGQGNKKG LSRLQVLMAT
501: ISLRRTKEKS LIGLPPKTVE TCYVELSPEE RQLYDHMEGE AKGVVQNLIN NGSLMRNYST VLSIILRLRQ LCDDMSLCPP ELRSFTTSTS VEDVTDKPEL
601: LQKLVAALQD GEDFDCPICI SPPTNIIITR CAHIFCRACI LQTLQRSKPL CPLCRGSLTQ SDLYNAPPPP PDSSNTDGED AKSSTKSSKV SALLSLLMAS
701: RQENPNTKSV VFSQFRKMLL LLETPLKAAG FTILRLDGAM TVKKRTQVIG EFGNPELTGP VVLLASLKAS GTGINLTAAS RVYLFDPWWN PAVEEQAMDR
801: IHRIGQKQEV KMIRMIARNS IEERVLELQQ KKKNLANEAF KRRQKKDERE VNVEDVVALM SL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)