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AT1G05120.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Helicase protein with RING/U-box domain
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Helicase protein with RING/U-box domain; FUNCTIONS IN: helicase activity, DNA binding, zinc ion binding, ATP binding, nucleic acid binding; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: P-loop containing nucleoside triphosphate hydrolases superfamily protein (TAIR:AT1G02670.1); Has 29218 Blast hits to 14448 proteins in 1607 species: Archae - 124; Bacteria - 8622; Metazoa - 6656; Fungi - 6694; Plants - 2674; Viruses - 189; Other Eukaryotes - 4259 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0553eggNOG:KOG1002EMBL:CP002684EnsemblPlants:AT1G05120
EnsemblPlants:AT1G05120.1entrez:839319Gene3D:3.30.40.10Gene3D:3.40.50.300
GeneID:839319GO:GO:0004386GO:GO:0005524GO:GO:0008270
Gramene:AT1G05120.1hmmpanther:PTHR10799hmmpanther:PTHR10799:SF763InParanoid:F4I795
InterPro:IPR000330InterPro:IPR001650InterPro:IPR001841InterPro:IPR013083
InterPro:IPR014001InterPro:IPR017907InterPro:IPR027417KEGG:ath:AT1G05120
KO:K15083OMA:YVATPIQPaxDb:F4I795Pfam:PF00176
Pfam:PF00271Pfam:PF14634Pfscan:PS50089Pfscan:PS51192
Pfscan:PS51194PRIDE:F4I795PROSITE:PS00518PROSITE:PS50089
PROSITE:PS51192PROSITE:PS51194ProteinModelPortal:F4I795Proteomes:UP000006548
RefSeq:NP_172004.1scanprosite:PS00518SMART:SM00184SMART:SM00487
SMART:SM00490SMR:F4I795STRING:3702.AT1G05120.1SUPFAM:SSF52540
SUPFAM:SSF57850TAIR:AT1G05120UniGene:At.49853UniProt:F4I795
Coordinates (TAIR10) chr1:-:1471624..1476067
Molecular Weight (calculated) 94593.30 Da
IEP (calculated) 8.16
GRAVY (calculated) -0.40
Length 833 amino acids
Sequence (TAIR10)
(BLAST)
001: MELRSRNKAI RPSTEVVDLE EGTGINPDEE PYAISSDDDS IGSEFQGDEE EEEELEEVVA NDDLPNPVPV LAIVNLPRAS KKRKKPDARK EKVVLLWETW
101: EKEQNSWIDE HMSEDVDLDQ HNAVIAETAE PPSDLIMPLL RYQKEFLAWA TKQEQSVAGG ILADEMGMGK TIQAISLVLA RREVDRAQFG EAAGCTLVLC
201: PLVAVSQWLN EIARFTSPGS TKVLVYHGAK RAKNIKEFMN YDFVLTTYST VESEYRRNIM PSKVQCAYCS KSFYPKKLVI HLRYFCGPSA VKTAKQSKQK
301: RKKTSDSSSQ QGKEADAGED KKLKKSKKKT KQTVEKDQLG SDDKEKSLLH SVKWNRIILD EAHYIKERRS NTARAVFALE ATYRWALSGT PLQNRVGELY
401: SLIRFLQIRP YSYYFCKDCD CRILDYVAHQ SCPHCPHNAV RHFCWWNKYV AKPITVYGSF GLGKRAMILL KHKVLKDILL RRTKLGRAAD LALPPRIITL
501: RRDTLDVKEF DYYESLYKNS QAEFNTYIEA GTLMNNYAHI FDLLTRLRQA VDHPYLVVYS NSSGANANLV DENKSEQECG LCHDPAEDYV VTSCAHVFCK
601: ACLIGFSASL GKVTCPTCSK LLTVDWTTKA DTEHKASKTT LKGFRASSIL NRIKLDDFQT STKIEALREE IRFMVERDGS AKAIVFSQFT SFLDLINYTL
701: GKCGVSCVQL VGSMTMAARD TAINKFKEDP DCRVFLMSLK AGGVALNLTV ASHVFMMDPW WNPAVERQAQ DRIHRIGQYK PIRVVRFIIE NTVEERILRL
801: QKKKELVFEG TVGGSQEAIG KLTEEDMRFL FTT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)