AT1G64720.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:vacuole 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Polyketide cyclase/dehydrase and lipid transport superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
membrane related protein CP5 | ||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
CP5; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: vacuole; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Lipid-binding START (InterPro:IPR002913); BEST Arabidopsis thaliana protein match is: Polyketide cyclase/dehydrase and lipid transport superfamily protein (TAIR:AT5G54170.1); Has 365 Blast hits to 364 proteins in 84 species: Archae - 0; Bacteria - 0; Metazoa - 181; Fungi - 0; Plants - 172; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:24046887..24048537 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 43760.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.68 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.21 | ||||||||||||||||||||||||||||||||||||
| Length | 385 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MMGLSSLVFT EFHSLGFSDL IVFVAPLWIA VAAGVLVGWV WRPKWAYLDS KLLSNSPKFL NLQLPTSILK TSSHHVNPSL SSKEKTGFVT DDDFRHLWKL 101: VEVKDGGPCW IQMMDRSTPT FSYQAWRRDP ENGPPQYRSR TVFEDATPEM VRDFFWDDEF RSKWDDMLLY SSTLERCKDT GTMVVQWVRK FPFFCSDREY 201: IIGRRIWDAG RVFYCITKGV QYPSVPRQNK PRRVDLYYSS WCIRAVESKR GDGEMTSCEV LLFHHEDMGI PWEIAKLGVR QGMWGAVKKI EPGLRAYQRA 301: KAAGAGLSPS AIMAHINTKV SAEEFMNERG SIAEVTGDKP TGKNIPKILV VGGAIALACT LDKGLLTKAV IFGVARRFAR MGKRM |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)