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AT5G19940.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31975158 (2020): plastid
  • PMID:31932409 (2020): plastid
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:30962257 (2019): plastid
  • PMID:30135097 (2018): plastid
  • PMID:29967049 (2018): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:24872594 (2014): plastid plastid thylakoid
  • PMID:24872594 (2014): plastid plastid envelope
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:23667806 (2013): plastid plastid thylakoid
  • PMID:22550958 (2012): plastid
  • PMID:22274653 (2012): plastid
  • PMID:21826108 (2012): Golgi trans-Golgi network multivesicular body
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:21531424 (2011): plastid
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:19334764 (2009): plasma membrane
  • PMID:18431481 (2008): plastid
  • PMID:15028209 (2004): plastid
  • PMID:12938931 (2003): plastid
  • PMID:12766230 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Plastid-lipid associated protein PAP / fibrillin family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Plastid-lipid associated protein PAP / fibrillin family protein; FUNCTIONS IN: structural molecule activity; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Plastid lipid-associated protein/fibrillin (InterPro:IPR006843); BEST Arabidopsis thaliana protein match is: Plastid-lipid associated protein PAP / fibrillin family protein (TAIR:AT3G26070.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IJBYeggNOG:ENOG4111J7KEMBL:AF296836EMBL:AY052240
EMBL:AY060505EMBL:AY087141EMBL:CP002688EnsemblPlants:AT5G19940
EnsemblPlants:AT5G19940.1entrez:832116ExpressionAtlas:Q941D3GeneID:832116
Genevisible:Q941D3GO:GO:0009507GO:GO:0009534GO:GO:0009941
hmmpanther:PTHR31906hmmpanther:PTHR31906:SF12HOGENOM:HOG000005808InterPro:IPR006843
OMA:YCSNPTSPaxDb:Q941D3Pfam:PF04755Pfam:Q941D3
PhylomeDB:Q941D3PRIDE:Q941D3PRO:PR:Q941D3Proteomes:UP000006548
RefSeq:NP_197494.1STRING:3702.AT5G19940.1TAIR:AT5G19940UniGene:At.31238
UniGene:At.66761UniProt:Q941D3
Coordinates (TAIR10) chr5:+:6739693..6740661
Molecular Weight (calculated) 26484.00 Da
IEP (calculated) 9.97
GRAVY (calculated) -0.16
Length 239 amino acids
Sequence (TAIR10)
(BLAST)
001: MAATASSLTI ASSFSEPRTQ IHSSRRLNLP LQYSIPYKVL RSRSRRLGLV VSSVSAPNVE LRTGPDDLIS TLLSKVANSD GGVTLSPEQH KEVAQVAGEL
101: QKYCVKEPVK NPLIFGDWEV VYCSRPTSPG GGYRSVIGRL FFKTKEMIQA IDAPDIVRNK VSINAFGFLD GDVSLTGKLK ALDSEWVQVI FEPPEIKVGS
201: LEFKYGFESE VKLRITYVDE KLRLGLGSKG SLFVFRRRQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)