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AT3G47470.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:32219438 (2020): cytosol
  • PMID:31975158 (2020): plastid
  • PMID:31932409 (2020): plastid
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:30962257 (2019): plastid
  • PMID:30865669 (2019): plastid
  • PMID:30135097 (2018): plastid
  • PMID:29967049 (2018): plastid
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27943495 (2017): mitochondrion
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi
  • PMID:25402197 (2015): plastid plastid thylakoid plastid thylakoid membrane
  • PMID:24872594 (2014): plastid plastid thylakoid
  • PMID:24124904 (2013): plastid
  • PMID:23851315 (2013): plastid
  • PMID:23673981 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:23667806 (2013): plastid plastid thylakoid
  • PMID:23549413 (2013): plastid
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:23390424 (2013): plastid plastid envelope
  • PMID:22550958 (2012): plastid
  • PMID:22215637 (2012): plasma membrane
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:21531424 (2011): plastid
  • PMID:21311031 (2011): plastid
  • PMID:21311031 (2011): mitochondrion
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:19334764 (2009): plasma membrane
  • PMID:18633119 (2008): plastid plastid thylakoid
  • PMID:18431481 (2008): plastid plastid thylakoid
  • PMID:15322131 (2004): plastid
  • PMID:15028209 (2004): plastid
  • PMID:14729914 (2004): plastid
  • PMID:12766230 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : light-harvesting chlorophyll-protein complex I subunit A4
Curator
Summary (TAIR10)
Encodes a chlorophyll a/b-binding protein that is more similar to the PSI Cab proteins than the PSII cab proteins. The predicted protein is about 20 amino acids shorter than most known Cab proteins.
Computational
Description (TAIR10)
light-harvesting chlorophyll-protein complex I subunit A4 (LHCA4); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: response to karrikin, photosynthesis; LOCATED IN: in 7 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: photosystem I light harvesting complex gene 2 (TAIR:AT3G61470.1); Has 2336 Blast hits to 2249 proteins in 223 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 1967; Viruses - 0; Other Eukaryotes - 366 (source: NCBI BLink).
Protein Annotations
BioGrid:9221eggNOG:ENOG410IQCXeggNOG:ENOG4110JH3EMBL:AL132955
EMBL:AY086470EMBL:AY093080EMBL:BT000093EMBL:CP002686
EMBL:M63931EnsemblPlants:AT3G47470EnsemblPlants:AT3G47470.1entrez:823901
Gene3D:1.10.3460.10GeneID:823901Genevisible:P27521GO:GO:0009409
GO:GO:0009416GO:GO:0009507GO:GO:0009522GO:GO:0009534
GO:GO:0009535GO:GO:0009579GO:GO:0009644GO:GO:0009645
GO:GO:0009768GO:GO:0009941GO:GO:0010287GO:GO:0016020
GO:GO:0016021GO:GO:0016168GO:GO:0018298GO:GO:0031409
GO:GO:0046872GO:GO:0080167Gramene:AT3G47470.1hmmpanther:PTHR21649
hmmpanther:PTHR21649:SF17HOGENOM:HOG000238033InParanoid:P27521InterPro:IPR001344
InterPro:IPR022796InterPro:IPR023329iPTMnet:P27521KEGG:ath:AT3G47470
KO:K08910ncoils:CoilOMA:KEQYFASPANTHER:PTHR21649
PaxDb:P27521Pfam:P27521Pfam:PF00504PhylomeDB:P27521
PIR:T45707PRIDE:P27521PRO:PR:P27521ProteinModelPortal:P27521
Proteomes:UP000006548RefSeq:NP_190331.3SMR:P27521STRING:3702.AT3G47470.1
SUPFAM:0043399SUPFAM:SSF103511TAIR:AT3G47470tair10-symbols:CAB4
tair10-symbols:LHCA4UniGene:At.21346UniGene:At.27524UniGene:At.35504
UniGene:At.35803UniGene:At.66361UniGene:At.68076UniGene:At.71101
UniProt:P27521
Coordinates (TAIR10) chr3:-:17493622..17494773
Molecular Weight (calculated) 27735.00 Da
IEP (calculated) 6.68
GRAVY (calculated) -0.16
Length 251 amino acids
Sequence (TAIR10)
(BLAST)
001: MATVTTHASA SIFRPCTSKP RFLTGSSGRL NRDLSFTSIG SSAKTSSFKV EAKKGEWLPG LASPDYLTGS LAGDNGFDPL GLAEDPENLK WFVQAELVNG
101: RWAMLGVAGM LLPEVFTKIG IINVPEWYDA GKEQYFASSS TLFVIEFILF HYVEIRRWQD IKNPGSVNQD PIFKQYSLPK GEVGYPGGIF NPLNFAPTQE
201: AKEKELANGR LAMLAFLGFV VQHNVTGKGP FENLLQHLSD PWHNTIVQTF N
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)