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AT3G54890.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31932409 (2020): plastid
  • PMID:31871212 (2020): mitochondrion
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:30962257 (2019): plastid
  • PMID:30865669 (2019): plastid
  • PMID:30135097 (2018): plastid
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27943495 (2017): mitochondrion
  • PMID:24124904 (2013): plastid
  • PMID:23851315 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:23673981 (2013): plastid
  • PMID:23667806 (2013): plastid plastid thylakoid
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:23390424 (2013): plastid plastid envelope
  • PMID:22215637 (2012): plasma membrane
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:21531424 (2011): plastid
  • PMID:21311031 (2011): plastid
  • PMID:21311031 (2011): mitochondrion
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:19334764 (2009): plasma membrane
  • PMID:18633119 (2008): plastid plastid thylakoid
  • PMID:18431481 (2008): plastid plastid thylakoid
  • PMID:16414959 (2006): plastid plastid stroma plastoglobules
  • PMID:15322131 (2004): plastid
  • PMID:15028209 (2004): plastid
  • PMID:14729914 (2004): plastid
  • PMID:12766230 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : photosystem I light harvesting complex gene 1
Curator
Summary (TAIR10)
Encodes a component of the light harvesting complex associated with photosystem I.
Computational
Description (TAIR10)
photosystem I light harvesting complex gene 1 (LHCA1); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: response to blue light, response to red light, photosynthesis, light harvesting in photosystem I, response to far red light, photosynthesis; LOCATED IN: in 7 components; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: light harvesting complex photosystem II (TAIR:AT3G08940.2); Has 2394 Blast hits to 2306 proteins in 223 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 1992; Viruses - 0; Other Eukaryotes - 399 (source: NCBI BLink).
Protein Annotations
BioGrid:9970DIP:DIP-59003NeggNOG:ENOG410IHXHeggNOG:ENOG410XVD6
EMBL:AF324692EMBL:AF325016EMBL:AF326866EMBL:AF339688
EMBL:AF361847EMBL:AK317555EMBL:AL049655EMBL:AY070473
EMBL:AY094437EMBL:BT000852EMBL:CP002686EMBL:M85150
EMBL:X56062EnsemblPlants:AT3G54890EnsemblPlants:AT3G54890.1entrez:824654
EvolutionaryTrace:Q01667ExpressionAtlas:Q01667Gene3D:1.10.3460.10GeneID:824654
Genevisible:Q01667GO:GO:0009409GO:GO:0009507GO:GO:0009522
GO:GO:0009534GO:GO:0009535GO:GO:0009579GO:GO:0009637
GO:GO:0009644GO:GO:0009645GO:GO:0009768GO:GO:0009941
GO:GO:0010114GO:GO:0010218GO:GO:0010287GO:GO:0016020
GO:GO:0016021GO:GO:0016168GO:GO:0018298GO:GO:0031409
GO:GO:0046872hmmpanther:PTHR21649hmmpanther:PTHR21649:SF7HOGENOM:HOG000238033
InParanoid:Q01667InterPro:IPR001344InterPro:IPR022796InterPro:IPR023329
OMA:GDIVIPFPANTHER:PTHR21649PaxDb:Q01667PDB:2O01
PDB:2WSCPDB:2WSEPDB:2WSFPDB:4XK8
PDBsum:2O01PDBsum:2WSCPDBsum:2WSEPDBsum:2WSF
PDBsum:4XK8Pfam:PF00504Pfam:Q01667PhylomeDB:Q01667
PIR:S25435PRIDE:Q01667PRO:PR:Q01667ProteinModelPortal:Q01667
Proteomes:UP000006548RefSeq:NP_191049.1SMR:Q01667STRING:3702.AT3G54890.1
SUPFAM:0043399SUPFAM:SSF103511TAIR:AT3G54890tair10-symbols:LHCA1
UniGene:At.23982UniGene:At.67867UniProt:Q01667
Coordinates (TAIR10) chr3:-:20339706..20340922
Molecular Weight (calculated) 25997.40 Da
IEP (calculated) 6.67
GRAVY (calculated) -0.07
Length 241 amino acids
Sequence (TAIR10)
(BLAST)
001: MASNSLMSCG IAAVYPSLLS SSKSKFVSAG VPLPNAGNVG RIRMAAHWMP GEPRPAYLDG SAPGDFGFDP LGLGEVPANL ERYKESELIH CRWAMLAVPG
101: ILVPEALGYG NWVKAQEWAA LPGGQATYLG NPVPWGTLPT ILAIEFLAIA FVEHQRSMEK DPEKKKYPGG AFDPLGYSKD PKKLEELKVK EIKNGRLALL
201: AFVGFCVQQS AYPGTGPLEN LATHLADPWH NNIGDIVIPF N
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)