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AT1G29910.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31932409 (2020): plastid
  • PMID:31871212 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31520498 (2020): mitochondrion
  • PMID:30962257 (2019): plastid
  • PMID:30875866 (2019): plasma membrane
  • PMID:30865669 (2019): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25402197 (2015): plastid plastid thylakoid plastid thylakoid membrane
  • PMID:24124904 (2013): plastid
  • PMID:23851315 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:23673981 (2013): plastid
  • PMID:23667806 (2013): plastid plastid thylakoid
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:23390424 (2013): plastid plastid envelope
  • PMID:22550958 (2012): plastid
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:21531424 (2011): plastid
  • PMID:21311031 (2011): plastid
  • PMID:21311031 (2011): mitochondrion
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:18633119 (2008): plastid plastid thylakoid
  • PMID:18431481 (2008): plastid plastid thylakoid
  • PMID:16414959 (2006): plastid plastid stroma plastoglobules
  • PMID:15322131 (2004): plastid
  • PMID:15276431 (2004): mitochondrion
  • PMID:15028209 (2004): plastid
  • PMID:14729914 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : chlorophyll A/B binding protein 3
Curator
Summary (TAIR10)
member of Chlorophyll a/b-binding protein family
Computational
Description (TAIR10)
chlorophyll A/B binding protein 3 (CAB3); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: photosynthesis, light harvesting, photosynthesis; LOCATED IN: in 6 components; EXPRESSED IN: cotyledon, guard cell, juvenile leaf, cultured cell, leaf; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: chlorophyll A/B-binding protein 2 (TAIR:AT1G29920.1); Has 2420 Blast hits to 2340 proteins in 222 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 2091; Viruses - 0; Other Eukaryotes - 325 (source: NCBI BLink).
Protein Annotations
BioGrid:25104BioGrid:25105DNASU:839869DNASU:839870
eggNOG:ENOG410IU0XeggNOG:ENOG410ZHBUEMBL:AC008030EMBL:AY052237
EMBL:AY054198EMBL:AY060500EMBL:AY062814EMBL:AY081572
EMBL:AY086905EMBL:AY128345EMBL:BT000726EMBL:CP002684
EMBL:X03907EnsemblPlants:AT1G29910EnsemblPlants:AT1G29910.1EnsemblPlants:AT1G29920.1
entrez:839869entrez:839870ExpressionAtlas:P0CJ48Gene3D:1.10.3460.10
GeneID:839869GeneID:839870Genevisible:P0CJ48GO:GO:0009507
GO:GO:0009522GO:GO:0009523GO:GO:0009535GO:GO:0009579
GO:GO:0009637GO:GO:0009750GO:GO:0009768GO:GO:0009941
GO:GO:0010114GO:GO:0010218GO:GO:0010287GO:GO:0016021
GO:GO:0016168GO:GO:0018298GO:GO:0031409GO:GO:0046872
GO:GO:0048046Gramene:AT1G29910.1Gramene:AT1G29920.1HOGENOM:HOG000238032
InParanoid:P0CJ48IntAct:P0CJ48InterPro:IPR022796InterPro:IPR023329
iPTMnet:P0CJ48KEGG:ath:AT1G29910KEGG:ath:AT1G29920KO:K08912
PaxDb:P0CJ48PDB:4YZHPDBsum:4YZHPfam:P0CJ48
Pfam:PF00504Pfam:Q8VZ87PhylomeDB:P0CJ48PIR:A29280
PRIDE:P0CJ48PRO:PR:P0CJ48ProteinModelPortal:P0CJ48Proteomes:UP000006548
RefSeq:NP_564339.1RefSeq:NP_564340.1SMR:P0CJ48STRING:3702.AT1G29920.1
SUPFAM:0043399SUPFAM:SSF103511TAIR:AT1G29920tair10-symbols:AB180
tair10-symbols:CAB3tair10-symbols:LHCB1.2UniGene:At.10812UniGene:At.24351
UniGene:At.27031UniGene:At.32199UniGene:At.43708UniGene:At.49175
UniGene:At.66422UniGene:At.70617UniGene:At.71449UniGene:At.71528
UniGene:At.71547UniProt:P0CJ48UniProt:Q8VZ87
Coordinates (TAIR10) chr1:-:10472443..10473246
Molecular Weight (calculated) 28228.60 Da
IEP (calculated) 5.09
GRAVY (calculated) 0.02
Length 267 amino acids
Sequence (TAIR10)
(BLAST)
001: MAASTMALSS PAFAGKAVNL SPAASEVLGS GRVTMRKTVA KPKGPSGSPW YGSDRVKYLG PFSGESPSYL TGEFPGDYGW DTAGLSADPE TFARNRELEV
101: IHSRWAMLGA LGCVFPELLA RNGVKFGEAV WFKAGSQIFS DGGLDYLGNP SLVHAQSILA IWATQVILMG AVEGYRVAGN GPLGEAEDLL YPGGSFDPLG
201: LATDPEAFAE LKVKELKNGR LAMFSMFGFF VQAIVTGKGP IENLADHLAD PVNNNAWAFA TNFVPGK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)