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AT1G29930.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : chlorophyll A/B binding protein 1
Curator
Summary (TAIR10)
Subunit of light-harvesting complex II (LHCII),which absorbs light and transfers energy to the photosynthetic reaction center.
Computational
Description (TAIR10)
chlorophyll A/B binding protein 1 (CAB1); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: photosynthesis; LOCATED IN: light-harvesting complex, thylakoid, chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: guard cell, juvenile leaf, cultured cell; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: chlorophyll A/B binding protein 3 (TAIR:AT1G29910.1); Has 2419 Blast hits to 2339 proteins in 222 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 2091; Viruses - 0; Other Eukaryotes - 324 (source: NCBI BLink).
Protein Annotations
BioGrid:25106eggNOG:ENOG410IU0XeggNOG:ENOG410ZHBUEMBL:AC008030
EMBL:AF428359EMBL:AY045673EMBL:AY050935EMBL:AY058180
EMBL:AY091169EMBL:CP002684EMBL:X03909EMBL:X15221
EMBL:X15222EMBL:Z17799EnsemblPlants:AT1G29930EnsemblPlants:AT1G29930.1
entrez:839871Gene3D:1.10.3460.10GeneID:839871Genevisible:P04778
GO:GO:0009416GO:GO:0009507GO:GO:0009522GO:GO:0009523
GO:GO:0009534GO:GO:0009535GO:GO:0009579GO:GO:0009768
GO:GO:0009941GO:GO:0010287GO:GO:0016021GO:GO:0016168
GO:GO:0018298GO:GO:0031409GO:GO:0046872Gramene:AT1G29930.1
hmmpanther:PTHR21649hmmpanther:PTHR21649:SF26HOGENOM:HOG000238032InParanoid:P04778
IntAct:P04778InterPro:IPR001344InterPro:IPR022796InterPro:IPR023329
iPTMnet:P04778KEGG:ath:AT1G29930KO:K08912OMA:GPSDSPW
PANTHER:PTHR21649PaxDb:P04778Pfam:P04778Pfam:PF00504
PhylomeDB:P04778PIR:A86423PRIDE:P04778PRO:PR:P04778
ProteinModelPortal:P04778Proteomes:UP000006548RefSeq:NP_174286.1SMR:P04778
STRING:3702.AT1G29930.1SUPFAM:0043399SUPFAM:SSF103511TAIR:AT1G29930
tair10-symbols:AB140tair10-symbols:CAB1tair10-symbols:CAB140tair10-symbols:LHCB1.3
UniGene:At.10812UniGene:At.19140UniGene:At.23809UniGene:At.24351
UniGene:At.32199UniGene:At.43708UniGene:At.48174UniGene:At.49175
UniGene:At.66422UniGene:At.71449UniGene:At.71528UniGene:At.71551
UniProt:P04778
Coordinates (TAIR10) chr1:+:10478071..10478874
Molecular Weight (calculated) 28242.70 Da
IEP (calculated) 5.35
GRAVY (calculated) 0.02
Length 267 amino acids
Sequence (TAIR10)
(BLAST)
001: MAASTMALSS PAFAGKAVKL SPAASEVLGS GRVTMRKTVA KPKGPSGSPW YGSDRVKYLG PFSGESPSYL TGEFPGDYGW DTAGLSADPE TFARNRELEV
101: IHSRWAMLGA LGCVFPELLA RNGVKFGEAV WFKAGSQIFS DGGLDYLGNP SLVHAQSILA IWATQVILMG AVEGYRVAGN GPLGEAEDLL YPGGSFDPLG
201: LATDPEAFAE LKVKELKNGR LAMFSMFGFF VQAIVTGKGP IENLADHLAD PVNNNAWAFA TNFVPGK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)