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AT2G20260.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31975158 (2020): plastid
  • PMID:31932409 (2020): plastid
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31186290 (2019): plastid plastid stroma
  • PMID:30962257 (2019): plastid
  • PMID:30865669 (2019): plastid
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30135097 (2018): plastid
  • PMID:29967049 (2018): plastid
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27943495 (2017): mitochondrion
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi
  • PMID:24872594 (2014): plastid plastid thylakoid
  • PMID:24872594 (2014): plastid plastid envelope
  • PMID:24748391 (2014): plastid
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:23851315 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:23667806 (2013): plastid plastid thylakoid
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:23390424 (2013): plastid plastid envelope
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:21531424 (2011): plastid
  • PMID:21311031 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:19334764 (2009): plasma membrane
  • PMID:18633119 (2008): plastid plastid thylakoid
  • PMID:18431481 (2008): plastid plastid thylakoid
  • PMID:15322131 (2004): plastid
  • PMID:15028209 (2004): plastid
  • PMID:14729914 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : photosystem I subunit E-2
Curator
Summary (TAIR10)
Encodes subunit E of photosystem I.
Computational
Description (TAIR10)
photosystem I subunit E-2 (PSAE-2); FUNCTIONS IN: catalytic activity; INVOLVED IN: photosynthesis; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast, plastoglobule, photosystem I reaction center; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem I reaction centre subunit IV/PsaE (InterPro:IPR003375), Electron transport accessory protein (InterPro:IPR008990); BEST Arabidopsis thaliana protein match is: Photosystem I reaction centre subunit IV / PsaE protein (TAIR:AT4G28750.1); Has 441 Blast hits to 441 proteins in 130 species: Archae - 0; Bacteria - 177; Metazoa - 0; Fungi - 0; Plants - 90; Viruses - 3; Other Eukaryotes - 171 (source: NCBI BLink).
Protein Annotations
BioCyc:MetaCyc:MONOMER-1096BioGrid:1898eggNOG:ENOG410J1R4eggNOG:ENOG41122QJ
EMBL:AC006569EMBL:AJ245909EMBL:AY042823EMBL:BT002540
EMBL:CP002685EnsemblPlants:AT2G20260EnsemblPlants:AT2G20260.1entrez:816545
GeneID:816545Genevisible:Q9S714GO:GO:0009507GO:GO:0009534
GO:GO:0009535GO:GO:0009538GO:GO:0009579GO:GO:0009735
GO:GO:0009941GO:GO:0010287GO:GO:0015979Gramene:AT2G20260.1
gramene_pathway:PWY-101hmmpanther:PTHR34549hmmpanther:PTHR34549:SF2HOGENOM:HOG000242291
InParanoid:Q9S714InterPro:IPR003375InterPro:IPR008990KEGG:ath:AT2G20260
KO:K02693OMA:SFLPMRSPaxDb:Q9S714Pfam:PF02427
Pfam:Q9S714PhylomeDB:Q9S714PIR:A84587PRIDE:Q9S714
PRO:PR:Q9S714ProDom:PD004772ProteinModelPortal:Q9S714Proteomes:UP000006548
RefSeq:NP_179616.1SMR:Q9S714STRING:3702.AT2G20260.1SUPFAM:SSF50090
TAIR:AT2G20260tair10-symbols:PSAE-2TCDB:5.B.4.1.1UniGene:At.23286
UniGene:At.39720UniProt:Q9S714
Coordinates (TAIR10) chr2:+:8736780..8737644
Molecular Weight (calculated) 15190.20 Da
IEP (calculated) 10.54
GRAVY (calculated) -0.13
Length 145 amino acids
Sequence (TAIR10)
(BLAST)
001: MAMTSAATGF ILTANVPAAI GGGSSKSTTI VSFLPMRSFG SRLVVRAAED TPPATASSDS SSTTAAAAPA KVPAAKAKPP PIGPKRGSKV KILRKESYWY
101: KNVGSVVAVD QDPKTRYPVV VRFAKVNYAN ISTNNYALDE VEEVK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)