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AT4G15510.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:23221595 (2012): plastid plastid thylakoid plastid thylakoid membrane
  • PMID:31932409 (2020): plastid
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:30962257 (2019): plastid
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30135097 (2018): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:22829322 (2012): plastid plastid thylakoid plastid thylakoid lumen
  • PMID:21539947 (2011): plastid plastid stroma
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:18433418 (2008): plastid plastid thylakoid plastid thylakoid lumen
  • PMID:18431481 (2008): plastid plastid thylakoid
  • PMID:16648217 (2006): plastid
  • PMID:16207701 (2006): plastid
  • PMID:15028209 (2004): plastid
  • PMID:14729914 (2004): plastid
  • PMID:11826309 (2002): plastid
  • PMID:11719511 (2002): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Photosystem II reaction center PsbP family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Photosystem II reaction center PsbP family protein; FUNCTIONS IN: calcium ion binding; INVOLVED IN: photosynthesis; LOCATED IN: in 9 components; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Photosystem II oxygen evolving complex protein PsbP (InterPro:IPR002683), Mog1/PsbP/DUF1795, alpha/beta/alpha sandwich (InterPro:IPR016124), Mog1/PsbP, alpha/beta/alpha sandwich (InterPro:IPR016123); BEST Arabidopsis thaliana protein match is: PsbP-like protein 1 (TAIR:AT3G55330.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:MetaCyc:AT4G15510-MONOMERDIP:DIP-58590NeggNOG:ENOG410IETKeggNOG:ENOG4111FF3
EMBL:AK175561EMBL:AL161541EMBL:AY085014EMBL:CP002687
EMBL:Z97339EnsemblPlants:AT4G15510EnsemblPlants:AT4G15510.1entrez:827223
Gene3D:3.40.1000.10GeneID:827223Genevisible:O23403GO:GO:0005509
GO:GO:0009507GO:GO:0009535GO:GO:0009543GO:GO:0009570
GO:GO:0009579GO:GO:0009654GO:GO:0016020GO:GO:0019898
GO:GO:0031977GO:GO:0048564hmmpanther:PTHR31407hmmpanther:PTHR31407:SF15
HOGENOM:HOG000242253InParanoid:O23403InterPro:IPR002683InterPro:IPR016123
KEGG:ath:AT4G15510OMA:FRANKIAPaxDb:O23403Pfam:O23403
Pfam:PF01789PhylomeDB:O23403PIR:G71419PRIDE:O23403
PRO:PR:O23403ProteinModelPortal:O23403Proteomes:UP000006548RefSeq:NP_001031646.1
RefSeq:NP_567468.1RefSeq:NP_974555.1SMR:O23403STRING:3702.AT4G15510.1
SUPFAM:SSF55724TAIR:AT4G15510UniGene:At.33171UniProt:O23403
Coordinates (TAIR10) chr4:+:8860701..8862529
Molecular Weight (calculated) 32267.40 Da
IEP (calculated) 9.16
GRAVY (calculated) -0.28
Length 287 amino acids
Sequence (TAIR10)
(BLAST)
001: MASSAFAFPS YIITKGASTD SFKSTSLSSS RSLVTDFHLL FSRPISSGPK YQSAKSAKPE SPVAINCLTD AKQVCAVGRR KSMMMGLLMS GLIVSQANLP
101: TAFASTPVFR EYIDTFDGYS FKYPQNWIQV RGAGADIFFR DPVVLDENLS VEFSSPSSSN YTSLEDLGSP EEVGKRVLRQ YLTEFMSTRL GVKRQANILS
201: TSSRVADDGK LYYQVEVNIK SYANNNELAV MPQDRVARLE WNRRYLAVLG VENDRLYSIR LQTPEKVFLE EEKDLRRVMD SFRVEKI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)