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AT1G50900.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:21098677 (2011): plastid plastid thylakoid plastid thylakoid membrane
  • PMID:31975158 (2020): plastid
  • PMID:31186290 (2019): plastid plastid stroma
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30135097 (2018): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:24124904 (2013): plastid
  • PMID:21531424 (2011): plastid
  • PMID:18431481 (2008): plastid
  • PMID:16207701 (2006): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Ankyrin repeat family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ankyrin repeat family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to karrikin; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); Has 55 Blast hits to 55 proteins in 21 species: Archae - 0; Bacteria - 2; Metazoa - 1; Fungi - 0; Plants - 49; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Protein Annotations
BioGrid:26737eggNOG:ENOG410IX8TeggNOG:ENOG4111Q7EEMBL:AC079284
EMBL:AY072348EMBL:AY085852EMBL:AY114573EMBL:CP002684
EnsemblPlants:AT1G50900EnsemblPlants:AT1G50900.1entrez:841512Gene3D:1.25.40.20
GeneID:841512Genevisible:Q8VY88GO:GO:0006886GO:GO:0009507
GO:GO:0009535GO:GO:0009570GO:GO:0009941GO:GO:0080167
GO:GO:0090391Gramene:AT1G50900.1hmmpanther:PTHR24151hmmpanther:PTHR24151:SF1
HOGENOM:HOG000242344InParanoid:Q8VY88IntAct:Q8VY88InterPro:IPR002110
InterPro:IPR020683iPTMnet:Q8VY88KEGG:ath:AT1G50900OMA:VDILLMM
PaxDb:Q8VY88Pfam:PF13857Pfam:Q8VY88Pfscan:PS50088
Pfscan:PS50297PIR:A96546PRIDE:Q8VY88PRO:PR:Q8VY88
PROSITE:PS50088PROSITE:PS50297ProteinModelPortal:Q8VY88Proteomes:UP000006548
RefSeq:NP_564580.1SMR:Q8VY88STRING:3702.AT1G50900.1SUPFAM:SSF48403
TAIR:AT1G50900tair10-symbols:GDC1TCDB:3.A.9.1.2UniGene:At.27641
UniGene:At.71538UniGene:At.72433UniProt:Q8VY88
Coordinates (TAIR10) chr1:+:18866272..18867014
Molecular Weight (calculated) 19190.70 Da
IEP (calculated) 5.97
GRAVY (calculated) -0.34
Length 175 amino acids
Sequence (TAIR10)
(BLAST)
001: MASSSISFSC APSLATSLFS TTSSSPRLLS SRFLGTRNLK LRIRPARLGP SNGSRTTCWF KFGKNGVDAE NAGIYGSQSR DDFDRDDVEQ YFNYMGMLAV
101: EGTYSKMEAL LNLNIHPVDI LLMLAATEGD RPKIEELLKA GADYSVKDAD GRTAIDRANS EEIRDLILGY STQKA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)