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AT5G54270.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31975158 (2020): plastid
  • PMID:31932409 (2020): plastid
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:30962257 (2019): plastid
  • PMID:30865669 (2019): plastid
  • PMID:30135097 (2018): plastid
  • PMID:29967049 (2018): plastid
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27943495 (2017): mitochondrion
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:25641898 (2015): plasma membrane
  • PMID:24872594 (2014): plastid plastid thylakoid
  • PMID:24124904 (2013): plastid
  • PMID:23851315 (2013): plastid
  • PMID:23673981 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:23667806 (2013): plastid plastid thylakoid
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:21531424 (2011): plastid
  • PMID:21311031 (2011): plastid
  • PMID:21311031 (2011): mitochondrion
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:19334764 (2009): plasma membrane
  • PMID:18633119 (2008): plastid plastid thylakoid
  • PMID:18431481 (2008): plastid plastid thylakoid
  • PMID:15322131 (2004): plastid
  • PMID:15028209 (2004): plastid
  • PMID:14729914 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : light-harvesting chlorophyll B-binding protein 3
Curator
Summary (TAIR10)
Lhcb3 protein is a component of the main light harvesting chlorophyll a/b-protein complex of Photosystem II (LHC II).
Computational
Description (TAIR10)
light-harvesting chlorophyll B-binding protein 3 (LHCB3); FUNCTIONS IN: structural molecule activity; INVOLVED IN: photosynthesis; LOCATED IN: light-harvesting complex, thylakoid, chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: photosystem II light harvesting complex gene 2.1 (TAIR:AT2G05100.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IKZWeggNOG:ENOG410YAI6EMBL:AB010695EMBL:AF134126
EMBL:AF143691EMBL:AF361858EMBL:AF372917EMBL:AY057735
EMBL:CP002688EnsemblPlants:AT5G54270EnsemblPlants:AT5G54270.1entrez:835515
Gene3D:1.10.3460.10GeneID:835515GO:GO:0005198GO:GO:0009416
GO:GO:0009507GO:GO:0009522GO:GO:0009534GO:GO:0009535
GO:GO:0009579GO:GO:0009768GO:GO:0009941GO:GO:0010287
GO:GO:0015979GO:GO:0016021GO:GO:0016168GO:GO:0018298
GO:GO:0031409GO:GO:0046872Gramene:AT5G54270.1hmmpanther:PTHR21649
hmmpanther:PTHR21649:SF11HOGENOM:HOG000238032InterPro:IPR001344InterPro:IPR022796
InterPro:IPR023329KEGG:ath:AT5G54270KO:K08914OMA:RITMGND
PANTHER:PTHR21649Pfam:PF00504PhylomeDB:Q9S7M0PIR:T52318
Proteomes:UP000006548RefSeq:NP_200238.1SMR:Q9S7M0STRING:3702.AT5G54270.1
SUPFAM:0043399SUPFAM:SSF103511TAIR:AT5G54270tair10-symbols:LHCB3
tair10-symbols:LHCB3*1UniGene:At.10812UniGene:At.21173UniGene:At.32199
UniGene:At.49175UniGene:At.66422UniGene:At.70236UniProt:Q9S7M0
Coordinates (TAIR10) chr5:+:22038424..22039383
Molecular Weight (calculated) 28708.20 Da
IEP (calculated) 4.74
GRAVY (calculated) 0.03
Length 265 amino acids
Sequence (TAIR10)
(BLAST)
001: MASTFTSSSS VLTPTTFLGQ TKASSFNPLR DVVSLGSPKY TMGNDLWYGP DRVKYLGPFS VQTPSYLTGE FPGDYGWDTA GLSADPEAFA KNRALEVIHG
101: RWAMLGAFGC ITPEVLQKWV RVDFKEPVWF KAGSQIFSEG GLDYLGNPNL VHAQSILAVL GFQVILMGLV EGFRINGLDG VGEGNDLYPG GQYFDPLGLA
201: DDPVTFAELK VKEIKNGRLA MFSMFGFFVQ AIVTGKGPLE NLLDHLDNPV ANNAWAFATK FAPGA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)