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AT4G10340.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:32219438 (2020): cytosol
  • PMID:31975158 (2020): plastid
  • PMID:31932409 (2020): plastid
  • PMID:31818904 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:30962257 (2019): plastid
  • PMID:30865669 (2019): plastid
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30309965 (2018): plastid
  • PMID:30135097 (2018): plastid
  • PMID:29967049 (2018): plastid
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:28524096 (2017): mitochondrion
  • PMID:27943495 (2017): mitochondrion
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25641898 (2015): plasma membrane
  • PMID:24872594 (2014): plastid plastid thylakoid
  • PMID:24124904 (2013): plastid
  • PMID:23851315 (2013): plastid
  • PMID:23673981 (2013): plastid
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:23667806 (2013): plastid plastid thylakoid
  • PMID:23549413 (2013): plastid
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:23390424 (2013): plastid plastid envelope
  • PMID:22550958 (2012): plastid
  • PMID:22215637 (2012): plasma membrane
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:21531424 (2011): plastid
  • PMID:21311031 (2011): plastid
  • PMID:21311031 (2011): mitochondrion
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:19334764 (2009): plasma membrane
  • PMID:18633119 (2008): plastid plastid thylakoid
  • PMID:18431481 (2008): plastid plastid thylakoid
  • PMID:16414959 (2006): plastid plastid stroma plastoglobules
  • PMID:15322131 (2004): plastid
  • PMID:15028209 (2004): plastid
  • PMID:14729914 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : light harvesting complex of photosystem II 5
Curator
Summary (TAIR10)
photosystem II encoding the light-harvesting chlorophyll a/b binding protein CP26 of the antenna system of the photosynthetic apparatus
Computational
Description (TAIR10)
light harvesting complex of photosystem II 5 (LHCB5); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: response to blue light, response to red light, response to far red light, photosynthesis, nonphotochemical quenching; LOCATED IN: in 9 components; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: chlorophyll A/B binding protein 1 (TAIR:AT1G29930.1); Has 2360 Blast hits to 2295 proteins in 226 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 2013; Viruses - 0; Other Eukaryotes - 343 (source: NCBI BLink).
Protein Annotations
BioGrid:11925DIP:DIP-59004NeggNOG:ENOG410IGYReggNOG:ENOG41110WY
EMBL:AF134129EMBL:AF326900EMBL:AF339718EMBL:AF380631
EMBL:AF424597EMBL:AL049488EMBL:AL161517EMBL:AY054126
EMBL:AY087939EMBL:CP002687EnsemblPlants:AT4G10340EnsemblPlants:AT4G10340.1
entrez:826626Gene3D:1.10.3460.10GeneID:826626Genevisible:Q9XF89
GO:GO:0009507GO:GO:0009517GO:GO:0009522GO:GO:0009534
GO:GO:0009535GO:GO:0009579GO:GO:0009637GO:GO:0009768
GO:GO:0009783GO:GO:0009941GO:GO:0010114GO:GO:0010196
GO:GO:0010218GO:GO:0010287GO:GO:0015979GO:GO:0016020
GO:GO:0016021GO:GO:0016168GO:GO:0018298GO:GO:0031409
GO:GO:0046872Gramene:AT4G10340.1hmmpanther:PTHR21649hmmpanther:PTHR21649:SF16
HOGENOM:HOG000238032InParanoid:Q9XF89InterPro:IPR001344InterPro:IPR022796
InterPro:IPR023329iPTMnet:Q9XF89KEGG:ath:AT4G10340KO:K08916
OMA:PINLIFAPANTHER:PTHR21649PaxDb:Q9XF89Pfam:PF00504
Pfam:Q9XF89PhylomeDB:Q9XF89PIR:T04049PRIDE:Q9XF89
PRO:PR:Q9XF89ProteinModelPortal:Q9XF89Proteomes:UP000006548RefSeq:NP_192772.1
SMR:Q9XF89STRING:3702.AT4G10340.1SUPFAM:0043399SUPFAM:SSF103511
TAIR:AT4G10340tair10-symbols:LHCB5UniGene:At.23060UniProt:Q9XF89
Coordinates (TAIR10) chr4:+:6408200..6409496
Molecular Weight (calculated) 30158.30 Da
IEP (calculated) 6.29
GRAVY (calculated) -0.03
Length 280 amino acids
Sequence (TAIR10)
(BLAST)
001: MASLGVSEML GTPLNFRAVS RSSAPLASSP STFKTVALFS KKKPAPAKSK AVSETSDELA KWYGPDRRIF LPDGLLDRSE IPEYLNGEVA GDYGYDPFGL
101: GKKPENFAKY QAFELIHARW AMLGAAGFII PEALNKYGAN CGPEAVWFKT GALLLDGNTL NYFGKNIPIN LVLAVVAEVV LLGGAEYYRI TNGLDFEDKL
201: HPGGPFDPLG LAKDPEQGAL LKVKEIKNGR LAMFAMLGFF IQAYVTGEGP VENLAKHLSD PFGNNLLTVI AGTAERAPTL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)